Variant report

Variant	rs10011751
Chromosome Location	chr4:93984995-93984996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11724865	0.84[ASN][1000 genomes]
rs11725186	0.92[ASN][1000 genomes]
rs11730324	0.81[ASN][1000 genomes]
rs11733088	0.84[ASN][1000 genomes]
rs11734429	0.81[EUR][1000 genomes]
rs12108474	0.95[ASN][1000 genomes]
rs13105522	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17020195	0.81[EUR][1000 genomes]
rs1847262	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34829716	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35764687	0.84[ASN][1000 genomes]
rs4373126	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56011292	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58129862	0.84[ASN][1000 genomes]
rs59397055	0.87[ASN][1000 genomes]
rs62308167	0.81[EUR][1000 genomes]
rs62308172	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62308200	0.92[ASN][1000 genomes]
rs62308201	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs62308202	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62308204	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs62308207	0.92[ASN][1000 genomes]
rs62308209	0.90[ASN][1000 genomes]
rs62308210	0.90[ASN][1000 genomes]
rs62308212	0.92[ASN][1000 genomes]
rs62308213	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62308214	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6849575	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72665250	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72665251	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72665274	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72665276	0.92[ASN][1000 genomes]
rs72887689	0.84[ASN][1000 genomes]
rs72887690	0.84[ASN][1000 genomes]
rs72887694	0.84[ASN][1000 genomes]
rs72889639	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916371	chr4:93673026-93994807	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv879611	chr4:93707288-93987251	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879614	chr4:93869564-93989892	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1011740	chr4:93904073-94073963	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3374790	chr4:93959718-94063251	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1797112	chr4:93974179-93993208	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv999660	chr4:93982635-94107714	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs10011751	ARC	trans	brain	seeQTL
rs10011751	FOSB	trans	brain	seeQTL
rs10011751	CCL3	trans	brain	seeQTL
rs10011751	DUSP6	trans	brain	seeQTL
rs10011751	EGR2	trans	brain	seeQTL
rs10011751	GADD45G	trans	brain	seeQTL
rs10011751	PTGS2	trans	brain	seeQTL
rs10011751	CCL4	trans	brain	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93974400-93988000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:93983200-93986800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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