Variant report

Variant	rs62308214
Chromosome Location	chr4:94039693-94039694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10011751	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11724865	0.89[ASN][1000 genomes]
rs11725186	0.97[ASN][1000 genomes]
rs11730324	0.87[ASN][1000 genomes]
rs11733088	0.89[ASN][1000 genomes]
rs11734429	0.83[EUR][1000 genomes]
rs12108474	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105522	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17020195	0.97[EUR][1000 genomes]
rs17020215	0.81[ASN][1000 genomes]
rs17020224	0.84[ASN][1000 genomes]
rs1847262	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28513308	0.84[ASN][1000 genomes]
rs34829716	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35764687	0.89[ASN][1000 genomes]
rs4373126	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56011292	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58129862	0.89[ASN][1000 genomes]
rs59397055	0.92[ASN][1000 genomes]
rs62308167	0.83[EUR][1000 genomes]
rs62308172	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62308200	0.97[ASN][1000 genomes]
rs62308201	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs62308202	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62308204	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62308207	0.97[ASN][1000 genomes]
rs62308209	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs62308210	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs62308212	0.97[ASN][1000 genomes]
rs62308213	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6849575	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72665250	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72665251	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72665274	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72665276	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72887689	0.89[ASN][1000 genomes]
rs72887690	0.89[ASN][1000 genomes]
rs72887694	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs72887698	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72889607	0.84[ASN][1000 genomes]
rs72889639	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1011740	chr4:93904073-94073963	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3374790	chr4:93959718-94063251	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv999660	chr4:93982635-94107714	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94030800-94039800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:94037400-94040200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:94037800-94040200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:94038000-94040000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:94038200-94040400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:94038400-94040000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr4:94038600-94040200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:94038800-94040000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:94039400-94039800	Enhancers	H9 Cell Line	embryonic stem cell

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