Variant report

Variant	rs10429430
Chromosome Location	chr8:118032189-118032190
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10429428	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12542825	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs12675339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13269147	0.81[JPT][hapmap]
rs1596895	0.82[JPT][hapmap]
rs17745041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995581	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2047962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2047963	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2317755	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2921722	0.81[JPT][hapmap]
rs3019886	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs3020107	0.86[JPT][hapmap]
rs3020108	0.81[JPT][hapmap]
rs3020110	0.87[JPT][hapmap]
rs3020114	0.81[JPT][hapmap]
rs3020115	0.82[JPT][hapmap]
rs3020116	0.81[JPT][hapmap]
rs4242567	0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs4242568	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs4269571	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs4510896	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs55926302	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56956780	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58928889	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60486060	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6469668	0.90[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs6987643	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7013929	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7842705	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7845491	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs921067	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1027920	chr8:117983619-118079816	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539732	chr8:117983619-118079816	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv527876	chr8:118012265-118037316	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1032976	chr8:118032075-118065907	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118031400-118032200	Enhancers	Hela-S3	cervix
2	chr8:118031400-118032400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:118031400-118032400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:118031400-118032400	Enhancers	HSMMtube	muscle
5	chr8:118031600-118032200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr8:118031600-118032400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr8:118031600-118032400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr8:118031600-118032400	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr8:118031800-118032200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:118031800-118032200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr8:118031800-118032200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:118031800-118032200	Flanking Active TSS	Fetal Heart	heart
13	chr8:118031800-118032200	Bivalent Enhancer	Fetal Lung	lung
14	chr8:118031800-118032400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr8:118031800-118032400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr8:118031800-118032400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:118031800-118032400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:118031800-118032400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr8:118031800-118032400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr8:118031800-118032400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:118031800-118032400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr8:118031800-118032400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr8:118031800-118032400	Enhancers	Stomach Smooth Muscle	stomach
24	chr8:118031800-118032400	Enhancers	HSMM	muscle
25	chr8:118032000-118032400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr8:118032000-118032400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr8:118032000-118032400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr8:118032000-118032400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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