Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10429430	0.82[JPT][hapmap]
rs12542825	0.91[JPT][hapmap]
rs12675339	0.82[JPT][hapmap]
rs13269147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1596895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17745041	0.82[JPT][hapmap]
rs1995581	0.91[JPT][hapmap]
rs2047962	0.81[JPT][hapmap]
rs2047963	0.91[JPT][hapmap]
rs2921721	0.92[EUR][1000 genomes]
rs2921722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3019879	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs3019886	0.91[JPT][hapmap]
rs3020107	0.96[CEU][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes]
rs3020108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3020110	1.00[CEU][hapmap];0.96[JPT][hapmap]
rs3020114	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3020116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4242567	0.91[JPT][hapmap]
rs4242568	0.91[JPT][hapmap]
rs4269571	0.91[JPT][hapmap]
rs4510896	0.91[JPT][hapmap]
rs6469667	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs6469668	0.91[JPT][hapmap]
rs6987643	0.81[JPT][hapmap]
rs7842705	0.91[JPT][hapmap]
rs921067	1.00[CEU][hapmap];0.96[JPT][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831434	chr8:117784467-117977825	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117974000-117974400	Enhancers	Brain Hippocampus Middle	brain
2	chr8:117974000-117974600	Enhancers	Brain Substantia Nigra	brain
3	chr8:117974200-117974400	Bivalent Enhancer	Brain Angular Gyrus	brain

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