Variant report

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:27543282-27543362	HUVEC	blood vessel:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:27541598..27544629-chr10:27547280..27549749,3	K562	blood:
2	chr10:27543129..27544646-chr10:27547554..27549718,2	K562	blood:
3	chr10:27537292..27539808-chr10:27543168..27544722,2	K562	blood:
4	chr10:27529474..27534457-chr10:27540904..27545668,8	MCF-7	breast:
5	chr10:27529521..27534854-chr10:27538591..27544292,11	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10430599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829212	0.81[ASN][1000 genomes]
rs10829219	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10829220	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10829221	0.82[ASN][1000 genomes]
rs11015626	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015627	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1144510	0.88[ASN][1000 genomes]
rs1144511	0.89[ASN][1000 genomes]
rs1148167	0.88[ASN][1000 genomes]
rs1328602	0.84[ASN][1000 genomes]
rs1780091	0.81[ASN][1000 genomes]
rs2243922	0.81[ASN][1000 genomes]
rs2770202	0.81[ASN][1000 genomes]
rs2780667	0.81[ASN][1000 genomes]
rs2780672	0.81[ASN][1000 genomes]
rs2780674	0.81[ASN][1000 genomes]
rs2780681	0.81[ASN][1000 genomes]
rs2800392	0.81[ASN][1000 genomes]
rs4749241	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4749242	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7088127	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7095530	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7895094	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7896532	0.85[ASN][1000 genomes]
rs7907444	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10430598	ARMC4P1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27538000-27547200	Weak transcription	Fetal Heart	heart
2	chr10:27541800-27546800	Weak transcription	HSMMtube	muscle
3	chr10:27542000-27545000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr10:27542000-27545000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:27542000-27545200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:27542000-27547400	Weak transcription	Right Ventricle	heart
7	chr10:27542000-27547600	Weak transcription	Pancreas	Pancrea
8	chr10:27542400-27546200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:27542600-27546600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr10:27542800-27545200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr10:27542800-27545200	Weak transcription	GM12878-XiMat	blood
12	chr10:27542800-27545800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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