Variant report

Variant	rs11015627
Chromosome Location	chr10:27546563-27546564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:27546284-27546681	H1-hESC	embryonic stem cell:	n/a	n/a
2	REST	chr10:27546293-27546742	HL-60	blood:	n/a	n/a
3	POLR2A	chr10:27546260-27546778	HL-60	blood:	n/a	n/a
4	POLR2A	chr10:27546397-27546577	H1-hESC	embryonic stem cell:	n/a	n/a
5	NFYB	chr10:27545947-27546629	K562	blood:	n/a	n/a
6	POLR2A	chr10:27546285-27546896	HL-60	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27540317..27543087-chr10:27544102..27547353,4	MCF-7	breast:

Variant related genes	Relation type
ARMC4P1	TF binding region
ENSG00000230445	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10430598	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10430599	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10829219	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10829220	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10829221	0.84[ASN][1000 genomes]
rs11015626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1144510	0.87[ASN][1000 genomes]
rs1144511	0.88[ASN][1000 genomes]
rs1148167	0.87[ASN][1000 genomes]
rs1328602	0.83[ASN][1000 genomes]
rs4749241	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4749242	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7088127	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095530	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7895094	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7896532	0.84[ASN][1000 genomes]
rs7907444	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11015627	ARMC4P1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27538000-27547200	Weak transcription	Fetal Heart	heart
2	chr10:27541800-27546800	Weak transcription	HSMMtube	muscle
3	chr10:27542000-27547400	Weak transcription	Right Ventricle	heart
4	chr10:27542000-27547600	Weak transcription	Pancreas	Pancrea
5	chr10:27542600-27546600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr10:27545800-27547000	Enhancers	Dnd41	blood
7	chr10:27546200-27546600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
8	chr10:27546200-27546600	Active TSS	Primary T cells from cord blood	blood
9	chr10:27546200-27546600	Active TSS	Primary T helper naive cells from peripheral blood	blood
10	chr10:27546200-27546600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:27546400-27546600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
12	chr10:27546400-27546600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
13	chr10:27546400-27546600	Bivalent/Poised TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:27546400-27546600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
15	chr10:27546400-27546600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:27546400-27546600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
17	chr10:27546400-27546600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:27546400-27546600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
19	chr10:27546400-27546800	Bivalent/Poised TSS	Primary B cells from cord blood	blood
20	chr10:27546400-27547000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
21	chr10:27546400-27547200	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
22	chr10:27546400-27547400	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
23	chr10:27546400-27547600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:27546400-27547600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:27546400-27547600	Bivalent Enhancer	Fetal Thymus	thymus

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