Variant report

Variant	rs10431362
Chromosome Location	chr12:4879461-4879462
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:4877676..4880260-chr12:4884636..4887457,2	MCF-7	breast:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10047570	0.89[ASN][1000 genomes]
rs10160902	0.80[ASN][1000 genomes]
rs10431361	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10774267	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10849125	0.84[ASN][1000 genomes]
rs10849126	0.89[ASN][1000 genomes]
rs10849127	0.89[ASN][1000 genomes]
rs10849129	0.89[ASN][1000 genomes]
rs10849130	0.89[ASN][1000 genomes]
rs10849131	0.89[ASN][1000 genomes]
rs10849133	0.88[ASN][1000 genomes]
rs10849137	0.93[ASN][1000 genomes]
rs10849138	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10849143	0.90[ASN][1000 genomes]
rs11063314	0.89[ASN][1000 genomes]
rs11063318	0.89[ASN][1000 genomes]
rs11063327	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11063328	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11063331	0.96[ASN][1000 genomes]
rs12296205	0.89[ASN][1000 genomes]
rs12320374	0.93[ASN][1000 genomes]
rs1468556	0.93[ASN][1000 genomes]
rs17783373	0.80[ASN][1000 genomes]
rs2018895	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2159354	0.81[ASN][1000 genomes]
rs2159355	0.81[ASN][1000 genomes]
rs2191157	0.93[ASN][1000 genomes]
rs2286578	0.89[ASN][1000 genomes]
rs2286580	0.93[ASN][1000 genomes]
rs2286581	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2286582	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2359466	0.93[ASN][1000 genomes]
rs2359467	0.93[ASN][1000 genomes]
rs35049745	0.80[ASN][1000 genomes]
rs3782740	0.89[ASN][1000 genomes]
rs3782741	0.89[ASN][1000 genomes]
rs3782742	0.90[ASN][1000 genomes]
rs3782743	0.80[EUR][1000 genomes]
rs4765779	0.80[ASN][1000 genomes]
rs4765782	0.83[ASN][1000 genomes]
rs4765784	0.90[EUR][1000 genomes]
rs4766276	0.80[ASN][1000 genomes]
rs4766278	0.80[ASN][1000 genomes]
rs4766279	0.80[ASN][1000 genomes]
rs4766280	0.80[ASN][1000 genomes]
rs4766281	0.80[ASN][1000 genomes]
rs4766282	0.84[ASN][1000 genomes]
rs4766283	0.84[ASN][1000 genomes]
rs4766286	0.89[ASN][1000 genomes]
rs6489565	0.93[ASN][1000 genomes]
rs6489566	0.93[ASN][1000 genomes]
rs6489567	0.92[ASN][1000 genomes]
rs7132030	0.93[ASN][1000 genomes]
rs7137040	0.80[ASN][1000 genomes]
rs7137660	0.80[ASN][1000 genomes]
rs7295230	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7295251	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7297290	0.89[ASN][1000 genomes]
rs7305387	0.93[ASN][1000 genomes]
rs7305525	0.93[ASN][1000 genomes]
rs7306235	0.80[ASN][1000 genomes]
rs7311475	0.80[ASN][1000 genomes]
rs7311675	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7311694	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7312119	0.80[ASN][1000 genomes]
rs7314849	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7315211	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7316209	0.93[ASN][1000 genomes]
rs766504	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs766505	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7953170	0.86[ASN][1000 genomes]
rs7953399	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7953482	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7966628	0.86[ASN][1000 genomes]
rs7967117	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7970126	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7972019	0.80[ASN][1000 genomes]
rs7973527	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7975978	0.93[ASN][1000 genomes]
rs7976011	0.93[ASN][1000 genomes]
rs7976219	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs929481	0.96[ASN][1000 genomes]
rs9300304	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054218	chr12:4819576-4882667	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4867200-4880200	Weak transcription	Spleen	Spleen
2	chr12:4869800-4884200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:4873200-4879800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr12:4873200-4881800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr12:4873200-4889800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr12:4873400-4881200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr12:4873400-4889400	Weak transcription	Ovary	ovary
8	chr12:4874600-4881000	Weak transcription	Fetal Brain Female	brain
9	chr12:4875600-4881400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:4876600-4880400	Weak transcription	Lung	lung
11	chr12:4876600-4881400	Weak transcription	Brain Germinal Matrix	brain
12	chr12:4877000-4885800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr12:4878000-4880600	Weak transcription	Fetal Heart	heart
14	chr12:4878200-4885000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr12:4878400-4880400	Weak transcription	Right Ventricle	heart
16	chr12:4878600-4880000	Weak transcription	Left Ventricle	heart
17	chr12:4878600-4881600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr12:4879400-4880200	Weak transcription	Right Atrium	heart

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