Variant report

Variant	rs11063331
Chromosome Location	chr12:4873934-4873935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:4873235..4875962-chr12:4887728..4890424,2	MCF-7	breast:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10047570	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10160902	0.83[ASN][1000 genomes]
rs10431361	0.98[ASN][1000 genomes]
rs10431362	0.96[ASN][1000 genomes]
rs10774267	0.98[ASN][1000 genomes]
rs10849125	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10849126	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10849127	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10849128	0.81[ASN][1000 genomes]
rs10849129	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10849130	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10849131	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10849133	0.91[ASN][1000 genomes]
rs10849137	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10849138	0.94[ASN][1000 genomes]
rs10849143	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11063314	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11063318	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11063327	0.94[ASN][1000 genomes]
rs11063328	0.93[ASN][1000 genomes]
rs12296205	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12312983	0.88[EUR][1000 genomes]
rs12320374	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12422704	0.81[EUR][1000 genomes]
rs1468556	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17783373	0.83[ASN][1000 genomes]
rs2109099	0.82[ASN][1000 genomes]
rs2109100	0.83[ASN][1000 genomes]
rs2159354	0.84[ASN][1000 genomes]
rs2159355	0.84[ASN][1000 genomes]
rs2191157	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2286578	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2286580	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2286581	0.91[ASN][1000 genomes]
rs2286582	0.91[ASN][1000 genomes]
rs2359466	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2359467	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35049745	0.83[ASN][1000 genomes]
rs3782740	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3782741	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3782742	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4765779	0.83[ASN][1000 genomes]
rs4765781	0.82[ASN][1000 genomes]
rs4765782	0.85[ASN][1000 genomes]
rs4766276	0.83[ASN][1000 genomes]
rs4766278	0.83[ASN][1000 genomes]
rs4766279	0.83[ASN][1000 genomes]
rs4766280	0.83[ASN][1000 genomes]
rs4766281	0.83[ASN][1000 genomes]
rs4766282	0.87[ASN][1000 genomes]
rs4766283	0.87[ASN][1000 genomes]
rs4766286	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6489565	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6489566	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6489567	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7132030	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7137040	0.83[ASN][1000 genomes]
rs7137660	0.83[ASN][1000 genomes]
rs7295230	0.94[ASN][1000 genomes]
rs7295251	0.94[ASN][1000 genomes]
rs7297290	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7305387	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7305525	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7306235	0.83[ASN][1000 genomes]
rs7311475	0.83[ASN][1000 genomes]
rs7311675	0.94[ASN][1000 genomes]
rs7311694	0.94[ASN][1000 genomes]
rs7312119	0.83[ASN][1000 genomes]
rs7314849	0.94[ASN][1000 genomes]
rs7315211	0.94[ASN][1000 genomes]
rs7316209	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7953170	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7953399	0.94[ASN][1000 genomes]
rs7953482	0.94[ASN][1000 genomes]
rs7966628	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7967117	0.98[ASN][1000 genomes]
rs7970126	0.90[ASN][1000 genomes]
rs7972019	0.83[ASN][1000 genomes]
rs7975978	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7976011	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7976219	0.91[ASN][1000 genomes]
rs929481	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9300304	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832318	chr12:4655799-4875837	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1054218	chr12:4819576-4882667	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4854200-4876000	Weak transcription	Fetal Brain Male	brain
2	chr12:4867200-4880200	Weak transcription	Spleen	Spleen
3	chr12:4868200-4874400	Weak transcription	Left Ventricle	heart
4	chr12:4868800-4874600	Weak transcription	Right Ventricle	heart
5	chr12:4869000-4875400	Weak transcription	Fetal Stomach	stomach
6	chr12:4869600-4875600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:4869800-4884200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr12:4871200-4874400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:4871800-4877800	Weak transcription	Brain Hippocampus Middle	brain
10	chr12:4872000-4875200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr12:4872600-4874600	Strong transcription	Fetal Brain Female	brain
12	chr12:4872800-4875600	Weak transcription	Adipose Nuclei	Adipose
13	chr12:4873000-4876400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr12:4873200-4879800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr12:4873200-4881800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr12:4873200-4889800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr12:4873400-4875600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr12:4873400-4876200	Weak transcription	Right Atrium	heart
19	chr12:4873400-4876600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr12:4873400-4881200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr12:4873400-4889400	Weak transcription	Ovary	ovary
22	chr12:4873600-4876200	Weak transcription	Brain Germinal Matrix	brain

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