Variant report

Variant	rs10432627
Chromosome Location	chr2:98561301-98561302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10432617	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10432628	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12053205	0.92[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1562293	0.96[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17033906	0.80[ASN][1000 genomes]
rs2278699	0.80[ASN][1000 genomes]
rs2289918	0.80[ASN][1000 genomes]
rs56293187	0.80[ASN][1000 genomes]
rs57831860	0.80[ASN][1000 genomes]
rs58019724	0.86[ASN][1000 genomes]
rs58511420	0.80[ASN][1000 genomes]
rs59562515	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs61228852	0.96[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6711959	0.80[ASN][1000 genomes]
rs72951160	0.80[ASN][1000 genomes]
rs73963109	0.80[ASN][1000 genomes]
rs746003	0.80[ASN][1000 genomes]
rs746004	0.80[ASN][1000 genomes]
rs7565744	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526360	chr2:98403683-98814054	Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv521568	chr2:98403683-98826203	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1004220	chr2:98423421-98816010	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1007259	chr2:98429744-98818080	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv535832	chr2:98429744-98818080	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1009218	chr2:98442640-98816010	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1003925	chr2:98442640-98821102	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv999442	chr2:98448732-98816010	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1013902	chr2:98454309-98818080	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1013416	chr2:98472701-98688729	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98553000-98561600	Weak transcription	Primary T cells from cord blood	blood
2	chr2:98553200-98565800	Weak transcription	Small Intestine	intestine
3	chr2:98553800-98562400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr2:98553800-98565800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:98554000-98561800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr2:98554000-98565800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:98554000-98570200	Weak transcription	Primary B cells from cord blood	blood
8	chr2:98554200-98563000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr2:98554400-98565400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr2:98558400-98562000	Weak transcription	Fetal Intestine Large	intestine
11	chr2:98559400-98562000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:98559800-98567800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr2:98560200-98566400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:98560400-98561600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr2:98561000-98561800	Weak transcription	Brain Substantia Nigra	brain
16	chr2:98561200-98561400	Enhancers	Duodenum Mucosa	Duodenum
17	chr2:98561200-98561400	Enhancers	HSMMtube	muscle
18	chr2:98561200-98562400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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