Variant report

Variant	rs746003
Chromosome Location	chr2:98362696-98362697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:98358429..98361588-chr2:98361675..98364926,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10432617	0.80[ASN][1000 genomes]
rs10432627	0.80[ASN][1000 genomes]
rs10432628	0.80[ASN][1000 genomes]
rs10460479	0.84[ASN][1000 genomes]
rs10460480	0.93[ASN][1000 genomes]
rs11687510	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs12053205	0.87[ASN][1000 genomes]
rs1562293	0.90[ASN][1000 genomes]
rs17033906	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278699	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289918	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289919	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35321446	0.95[ASN][1000 genomes]
rs55957600	0.82[EUR][1000 genomes]
rs56293187	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56948188	0.95[ASN][1000 genomes]
rs57831860	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58019724	0.89[ASN][1000 genomes]
rs58511420	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59562515	0.89[ASN][1000 genomes]
rs61228852	0.87[ASN][1000 genomes]
rs62157588	0.94[ASN][1000 genomes]
rs6543040	0.89[CHB][hapmap]
rs6711959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72951160	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73963109	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746004	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7565744	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531382	chr2:98250628-98457616	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv874696	chr2:98309882-98362907	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98345000-98366400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr2:98348200-98372400	Weak transcription	Esophagus	oesophagus
3	chr2:98348800-98364600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:98352200-98398800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:98354400-98368200	Weak transcription	Colonic Mucosa	Colon
6	chr2:98355000-98373200	Weak transcription	Gastric	stomach
7	chr2:98356800-98363000	Weak transcription	HSMMtube	muscle
8	chr2:98357000-98365400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr2:98357200-98367400	Weak transcription	Brain Substantia Nigra	brain
10	chr2:98357400-98366000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr2:98357400-98368000	Weak transcription	Lung	lung
12	chr2:98357400-98368600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr2:98357400-98371400	Weak transcription	Dnd41	blood
14	chr2:98357400-98372000	Weak transcription	Pancreas	Pancrea
15	chr2:98357600-98363200	Enhancers	Hela-S3	cervix
16	chr2:98357600-98364600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr2:98357600-98365800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr2:98358600-98372000	Weak transcription	Brain Germinal Matrix	brain
19	chr2:98358800-98371600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr2:98359000-98363600	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr2:98359000-98363800	Weak transcription	Fetal Brain Female	brain
22	chr2:98359000-98365000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr2:98359000-98366600	Weak transcription	Liver	Liver
24	chr2:98359000-98368400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:98359000-98368400	Weak transcription	NHLF	lung
26	chr2:98359200-98363400	Weak transcription	Fetal Heart	heart
27	chr2:98359200-98364000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr2:98359200-98364000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr2:98359200-98364800	Weak transcription	Fetal Thymus	thymus
30	chr2:98359200-98365000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr2:98359200-98365000	Weak transcription	Thymus	Thymus
32	chr2:98359200-98365000	Weak transcription	Spleen	Spleen
33	chr2:98359200-98368000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr2:98359200-98368000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr2:98359200-98368600	Weak transcription	NH-A	brain
36	chr2:98359200-98368600	Weak transcription	Osteobl	bone
37	chr2:98359200-98371000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr2:98359200-98371200	Weak transcription	Small Intestine	intestine
39	chr2:98359200-98371800	Weak transcription	Right Ventricle	heart
40	chr2:98359200-98382400	Weak transcription	Psoas Muscle	Psoas
41	chr2:98359400-98365200	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr2:98359600-98363800	Weak transcription	Left Ventricle	heart
43	chr2:98359600-98365400	Enhancers	Primary T cells fromperipheralblood	blood
44	chr2:98359600-98365400	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr2:98359600-98367600	Weak transcription	HMEC	breast
46	chr2:98359600-98368000	Weak transcription	Right Atrium	heart
47	chr2:98359600-98371000	Weak transcription	Brain Angular Gyrus	brain
48	chr2:98359600-98371000	Weak transcription	Brain Cingulate Gyrus	brain
49	chr2:98360200-98365200	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr2:98360200-98371200	Weak transcription	Brain Inferior Temporal Lobe	brain

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