Variant report

Variant	rs10434026
Chromosome Location	chr4:119903714-119903715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:119903523..119905164-chr4:120413210..120416125,2	MCF-7	breast:
2	chr4:119903318..119905119-chr4:120133808..120135717,2	MCF-7	breast:
3	chr4:119903589..119905538-chr4:120130770..120132703,2	MCF-7	breast:
4	chr4:119902777..119905378-chr4:119907189..119909991,2	MCF-7	breast:
5	chr17:27717127..27719243-chr4:119902588..119905576,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145390	Chromatin interaction
ENSG00000245958	Chromatin interaction
ENSG00000263719	Chromatin interaction
ENSG00000160551	Chromatin interaction
ENSG00000264808	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10434027	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10518316	0.81[ASN][1000 genomes]
rs13108576	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111284	0.84[ASN][1000 genomes]
rs17050193	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17050208	0.82[ASN][1000 genomes]
rs34340576	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36116256	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119896400-119907600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:119901400-119905400	Enhancers	Ovary	ovary
3	chr4:119901400-119907000	Enhancers	Psoas Muscle	Psoas
4	chr4:119901400-119911600	Enhancers	Rectal Smooth Muscle	rectum
5	chr4:119901600-119903800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:119901600-119904600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:119901600-119904600	Enhancers	Osteobl	bone
8	chr4:119901800-119904200	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr4:119902000-119904000	Enhancers	Fetal Heart	heart
10	chr4:119902000-119904400	Enhancers	HSMMtube	muscle
11	chr4:119902000-119904600	Enhancers	NHDF-Ad	bronchial
12	chr4:119902000-119904800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:119902000-119904800	Enhancers	NH-A	brain
14	chr4:119902200-119904200	Enhancers	NHLF	lung
15	chr4:119902200-119904600	Enhancers	HSMM	muscle
16	chr4:119902200-119905800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:119902200-119906400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr4:119902600-119907000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:119902800-119904000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr4:119902800-119904600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:119903000-119905600	Weak transcription	Fetal Muscle Leg	muscle
22	chr4:119903000-119909800	Weak transcription	Fetal Stomach	stomach
23	chr4:119903000-119910200	Enhancers	Colon Smooth Muscle	Colon
24	chr4:119903200-119903800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr4:119903200-119904800	Enhancers	HMEC	breast
26	chr4:119903400-119903800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:119903400-119903800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr4:119903400-119904000	Flanking Active TSS	Stomach Smooth Muscle	stomach
29	chr4:119903400-119904200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:119903400-119904400	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr4:119903600-119903800	Enhancers	Aorta	Aorta
32	chr4:119903600-119903800	Enhancers	Left Ventricle	heart
33	chr4:119903600-119903800	Enhancers	Right Atrium	heart
34	chr4:119903600-119904000	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr4:119903600-119904200	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr4:119903600-119904400	Enhancers	Right Ventricle	heart
37	chr4:119903600-119904600	Weak transcription	Adipose Nuclei	Adipose
38	chr4:119903600-119905800	Enhancers	Skeletal Muscle Male	skeletal muscle

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