Variant report

Variant	rs36116256
Chromosome Location	chr4:119895409-119895410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119890629..119893657-chr4:119893845..119896663,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10434026	0.83[ASN][1000 genomes]
rs10518316	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13108576	0.83[ASN][1000 genomes]
rs13111284	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13117365	0.94[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13151719	0.87[AFR][1000 genomes]
rs17050193	0.82[ASN][1000 genomes]
rs17050208	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28667954	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119886600-119896800	Enhancers	Rectal Smooth Muscle	rectum
2	chr4:119889800-119896200	Weak transcription	Fetal Thymus	thymus
3	chr4:119890400-119895800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:119890400-119895800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:119890400-119896000	Weak transcription	Right Ventricle	heart
6	chr4:119890400-119896000	Weak transcription	NH-A	brain
7	chr4:119890400-119896400	Enhancers	Colon Smooth Muscle	Colon
8	chr4:119890600-119895600	Weak transcription	HMEC	breast
9	chr4:119890600-119896000	Weak transcription	Adipose Nuclei	Adipose
10	chr4:119890600-119898200	Weak transcription	Fetal Stomach	stomach
11	chr4:119890800-119895600	Weak transcription	Fetal Intestine Small	intestine
12	chr4:119890800-119896200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr4:119890800-119896200	Weak transcription	HSMMtube	muscle
14	chr4:119891200-119895800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:119892400-119897000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:119892600-119896800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr4:119892800-119897000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr4:119893600-119896200	Weak transcription	Psoas Muscle	Psoas
19	chr4:119893600-119901400	Weak transcription	Ovary	ovary
20	chr4:119893600-119902600	Weak transcription	Right Atrium	heart
21	chr4:119893800-119897000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:119893800-119897000	Enhancers	Stomach Smooth Muscle	stomach
23	chr4:119894000-119896000	Weak transcription	Fetal Heart	heart
24	chr4:119894200-119897200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:119894200-119897200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr4:119894400-119895800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr4:119894600-119896000	Weak transcription	Esophagus	oesophagus
28	chr4:119894600-119897000	Enhancers	NHDF-Ad	bronchial
29	chr4:119894800-119896400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr4:119895000-119895600	Weak transcription	NHLF	lung
31	chr4:119895000-119897000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr4:119895000-119897200	Enhancers	Osteobl	bone
33	chr4:119895200-119896000	Weak transcription	Aorta	Aorta
34	chr4:119895400-119895600	Enhancers	Left Ventricle	heart
35	chr4:119895400-119895600	Enhancers	Small Intestine	intestine
36	chr4:119895400-119896600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr4:119895400-119897400	Enhancers	Fetal Intestine Large	intestine

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