Variant report

Variant	rs13151719
Chromosome Location	chr4:119878223-119878224
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10017229	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10518316	0.90[AFR][1000 genomes]
rs10518317	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13111284	0.87[AFR][1000 genomes]
rs13117365	0.81[AFR][1000 genomes]
rs17050228	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17050240	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17261234	0.90[EUR][1000 genomes]
rs17327171	0.87[EUR][1000 genomes]
rs2389694	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34123613	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36116256	0.87[AFR][1000 genomes]
rs4261974	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4299565	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4834729	0.87[ASN][1000 genomes]
rs67109496	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671630	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119868800-119886000	Weak transcription	Fetal Stomach	stomach
2	chr4:119870200-119878800	Weak transcription	Small Intestine	intestine
3	chr4:119874200-119886000	Enhancers	Rectal Smooth Muscle	rectum
4	chr4:119875200-119885800	Weak transcription	NHLF	lung
5	chr4:119875800-119879000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:119875800-119880800	Weak transcription	Brain Anterior Caudate	brain
7	chr4:119876400-119886000	Weak transcription	Aorta	Aorta
8	chr4:119876600-119879000	Weak transcription	Psoas Muscle	Psoas
9	chr4:119876800-119878400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:119876800-119878400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:119876800-119882800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:119877000-119878400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr4:119877000-119878400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:119877200-119878400	Weak transcription	Colon Smooth Muscle	Colon
15	chr4:119877200-119878800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:119877800-119879800	Enhancers	Right Atrium	heart
17	chr4:119877800-119880000	Enhancers	Left Ventricle	heart
18	chr4:119877800-119880000	Enhancers	Ovary	ovary
19	chr4:119877800-119880000	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr4:119878200-119878600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:119878200-119878600	Enhancers	Right Ventricle	heart

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