Variant report

Variant	rs10017229
Chromosome Location	chr4:119874611-119874612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10518316	0.84[JPT][hapmap]
rs10518317	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13151719	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17050208	0.84[JPT][hapmap]
rs17050228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17050240	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17261234	0.91[EUR][1000 genomes]
rs17327171	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs2389694	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34123613	1.00[ASN][1000 genomes]
rs4261974	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4299565	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4834729	0.95[CEU][hapmap];0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs67109496	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671630	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119868800-119886000	Weak transcription	Fetal Stomach	stomach
2	chr4:119870200-119878800	Weak transcription	Small Intestine	intestine
3	chr4:119872600-119875000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:119872600-119875000	Weak transcription	Aorta	Aorta
5	chr4:119872600-119878200	Weak transcription	Right Ventricle	heart
6	chr4:119873200-119875000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:119873400-119875000	Weak transcription	Brain Anterior Caudate	brain
8	chr4:119873400-119876200	Weak transcription	Right Atrium	heart
9	chr4:119873800-119877000	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr4:119874000-119876800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr4:119874000-119877200	Enhancers	Colon Smooth Muscle	Colon
12	chr4:119874200-119875400	Enhancers	Stomach Smooth Muscle	stomach
13	chr4:119874200-119886000	Enhancers	Rectal Smooth Muscle	rectum
14	chr4:119874400-119875000	Enhancers	HSMMtube	muscle
15	chr4:119874400-119875000	Enhancers	NH-A	brain
16	chr4:119874400-119875200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:119874400-119875600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr4:119874400-119875800	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr4:119874400-119876400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:119874400-119876600	Enhancers	Left Ventricle	heart
21	chr4:119874400-119876600	Enhancers	Ovary	ovary
22	chr4:119874400-119876600	Enhancers	Psoas Muscle	Psoas
23	chr4:119874400-119877000	Enhancers	NHDF-Ad	bronchial
24	chr4:119874600-119875200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:119874600-119875200	Enhancers	NHLF	lung
26	chr4:119874600-119875800	Enhancers	HSMM	muscle

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