Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119860379..119862289-chr4:119871978..119873923,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10017229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10518316	0.84[JPT][hapmap]
rs10518317	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13151719	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17050208	0.84[JPT][hapmap]
rs17050240	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17261234	0.91[EUR][1000 genomes]
rs17327171	0.86[CEU][hapmap];0.90[GIH][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs2389694	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34123613	0.99[ASN][1000 genomes]
rs4261974	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4299565	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4834729	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];0.86[ASN][1000 genomes]
rs67109496	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72671630	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119868800-119886000	Weak transcription	Fetal Stomach	stomach
2	chr4:119870000-119874400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:119870200-119878800	Weak transcription	Small Intestine	intestine
4	chr4:119871400-119873200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr4:119871400-119873200	Enhancers	Stomach Smooth Muscle	stomach
6	chr4:119871400-119873600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr4:119871600-119873400	Enhancers	Right Atrium	heart
8	chr4:119871800-119874400	Weak transcription	Psoas Muscle	Psoas
9	chr4:119872600-119874200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:119872600-119874400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:119872600-119874400	Weak transcription	Left Ventricle	heart
12	chr4:119872600-119874400	Weak transcription	HSMMtube	muscle
13	chr4:119872600-119874600	Weak transcription	HSMM	muscle
14	chr4:119872600-119875000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:119872600-119875000	Weak transcription	Aorta	Aorta
16	chr4:119872600-119878200	Weak transcription	Right Ventricle	heart
17	chr4:119872800-119873200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr4:119872800-119873800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr4:119872800-119874400	Weak transcription	Ovary	ovary
20	chr4:119873000-119874000	Weak transcription	Colon Smooth Muscle	Colon

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