Variant report

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10017229	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10518317	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13151719	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17050228	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17050240	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17261234	0.91[EUR][1000 genomes]
rs17327171	0.88[EUR][1000 genomes]
rs2389694	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34123613	1.00[ASN][1000 genomes]
rs4261974	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4299565	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4834729	0.87[ASN][1000 genomes]
rs72671630	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119868600-119872200	Weak transcription	Fetal Heart	heart
2	chr4:119868800-119886000	Weak transcription	Fetal Stomach	stomach
3	chr4:119870000-119874400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:119870200-119872200	Weak transcription	Aorta	Aorta
5	chr4:119870200-119878800	Weak transcription	Small Intestine	intestine
6	chr4:119870400-119871800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:119871400-119871800	Enhancers	Lung	lung
8	chr4:119871400-119872600	Enhancers	Left Ventricle	heart
9	chr4:119871400-119872600	Enhancers	Right Ventricle	heart
10	chr4:119871400-119872600	Enhancers	Spleen	Spleen
11	chr4:119871400-119872800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr4:119871400-119872800	Enhancers	Ovary	ovary
13	chr4:119871400-119872800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr4:119871400-119873200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr4:119871400-119873200	Enhancers	Stomach Smooth Muscle	stomach
16	chr4:119871400-119873600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr4:119871600-119871800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr4:119871600-119871800	Enhancers	Psoas Muscle	Psoas
19	chr4:119871600-119872600	Enhancers	Rectal Smooth Muscle	rectum
20	chr4:119871600-119873000	Enhancers	Colon Smooth Muscle	Colon
21	chr4:119871600-119873400	Enhancers	Right Atrium	heart

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