Variant report

Variant	rs10434640
Chromosome Location	chr5:90578301-90578302
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr5:90578017-90578420	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:90574749..90579554-chr5:90606387..90610471,6	MCF-7	breast:
2	chr5:90577977..90579525-chr5:90625144..90627045,2	K562	blood:
3	chr5:90574103..90582351-chr5:90673173..90681609,28	K562	blood:
4	chr5:90574805..90578594-chr5:90673900..90681432,13	MCF-7	breast:
5	chr5:90573090..90582351-chr5:90673821..90680716,23	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPR98-6	chr5:90575897-90578519	NONHSAT102741

No data

Variant related genes	Relation type
ENSG00000234292	TF binding region
ENSG00000271762	Chromatin interaction
ENSG00000248323	Chromatin interaction
ENSG00000113369	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10038890	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10473944	0.81[ASN][1000 genomes]
rs10474343	0.83[ASN][1000 genomes]
rs11740007	0.84[ASN][1000 genomes]
rs12514092	0.81[ASN][1000 genomes]
rs12697808	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13171635	0.84[AFR][1000 genomes]
rs1511345	0.91[AFR][1000 genomes]
rs2367292	0.83[ASN][1000 genomes]
rs28529720	0.81[ASN][1000 genomes]
rs2973477	0.83[ASN][1000 genomes]
rs4639266	0.85[ASN][1000 genomes]
rs4916855	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4916856	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4916858	0.81[ASN][1000 genomes]
rs868556	0.82[ASN][1000 genomes]
rs868557	0.82[ASN][1000 genomes]
rs973332	0.83[ASN][1000 genomes]
rs997737	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90576800-90583800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:90577000-90579200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr5:90577200-90579000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr5:90577200-90580200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:90577400-90578400	Enhancers	HUVEC	blood vessel
6	chr5:90577400-90578400	Enhancers	NHDF-Ad	bronchial
7	chr5:90577400-90578600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:90577400-90579000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr5:90577400-90579200	Weak transcription	Stomach Mucosa	stomach
10	chr5:90577400-90580400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr5:90577400-90580400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:90577400-90580800	Enhancers	Hela-S3	cervix
13	chr5:90577400-90581000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:90577600-90578600	Weak transcription	Placenta	Placenta
15	chr5:90577600-90579200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:90577600-90579200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:90577600-90579200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:90577600-90579400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr5:90577600-90579400	Weak transcription	Small Intestine	intestine
20	chr5:90577600-90579600	Weak transcription	Colon Smooth Muscle	Colon
21	chr5:90577600-90579800	Weak transcription	HSMM	muscle
22	chr5:90577600-90583800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr5:90577800-90579400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr5:90577800-90583800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr5:90578000-90579200	Weak transcription	NHEK	skin
26	chr5:90578000-90579400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr5:90578000-90579400	Weak transcription	A549	lung
28	chr5:90578000-90579600	Weak transcription	NHLF	lung
29	chr5:90578200-90579200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr5:90578200-90579200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr5:90578200-90579200	Weak transcription	HMEC	breast
32	chr5:90578200-90579200	Weak transcription	Osteobl	bone
33	chr5:90578200-90580000	Weak transcription	NH-A	brain

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