Variant report

Variant	rs13171635
Chromosome Location	chr5:90585455-90585456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:90575881..90577890-chr5:90584257..90586570,2	MCF-7	breast:
2	chr5:90584273..90591126-chr5:90674763..90680414,9	K562	blood:
3	chr5:90583616..90587615-chr5:90675454..90678500,4	MCF-7	breast:
4	chr5:90567993..90570538-chr5:90584215..90586470,2	K562	blood:
5	chr5:90583980..90586085-chr5:90596174..90598771,2	K562	blood:

Variant related genes	Relation type
ENSG00000234292	Chromatin interaction
ENSG00000113369	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10038090	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10061355	0.86[ASN][1000 genomes]
rs10434640	0.84[AFR][1000 genomes]
rs10462343	0.91[ASN][1000 genomes]
rs10462492	0.90[ASN][1000 genomes]
rs10474346	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10474347	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10805873	0.86[ASN][1000 genomes]
rs12697807	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1511344	0.97[ASN][1000 genomes]
rs1511345	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1543066	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1858309	0.84[ASN][1000 genomes]
rs2048451	0.91[ASN][1000 genomes]
rs2048452	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2973441	0.83[ASN][1000 genomes]
rs4019243	0.97[ASN][1000 genomes]
rs4019302	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4364415	0.91[ASN][1000 genomes]
rs4377733	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4424024	0.86[ASN][1000 genomes]
rs4518439	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6859170	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6869552	0.97[ASN][1000 genomes]
rs6882172	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6885341	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6888389	0.90[ASN][1000 genomes]
rs6888674	0.90[ASN][1000 genomes]
rs6889197	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6897578	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6898622	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7709572	0.86[ASN][1000 genomes]
rs7719516	0.87[ASN][1000 genomes]
rs7724489	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90580400-90587200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr5:90583800-90585800	Enhancers	Colon Smooth Muscle	Colon
3	chr5:90583800-90585800	Enhancers	Rectal Smooth Muscle	rectum
4	chr5:90583800-90587800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:90584000-90589000	Weak transcription	Placenta	Placenta
6	chr5:90584400-90587400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr5:90584600-90589600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:90584800-90585600	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr5:90584800-90588000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr5:90584800-90589000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:90584800-90589200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr5:90585000-90589000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:90585000-90592000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr5:90585200-90585600	Weak transcription	Fetal Stomach	stomach
15	chr5:90585200-90586000	Enhancers	Right Atrium	heart
16	chr5:90585200-90587400	Weak transcription	Fetal Thymus	thymus
17	chr5:90585400-90589400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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