Variant report

Variant	rs6869552
Chromosome Location	chr5:90580370-90580371
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:90574103..90582351-chr5:90673173..90681609,28	K562	blood:
2	chr5:90576594..90578852-chr5:90580333..90581936,2	MCF-7	breast:
3	chr5:90573090..90582351-chr5:90673821..90680716,23	K562	blood:
4	chr5:90576031..90578202-chr5:90580152..90582939,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113369	Chromatin interaction
ENSG00000234292	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10038090	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10061355	0.86[ASN][1000 genomes]
rs10462343	0.91[ASN][1000 genomes]
rs10462492	0.90[ASN][1000 genomes]
rs10474346	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10474347	0.92[ASN][1000 genomes]
rs10805873	0.83[ASN][1000 genomes]
rs12697807	0.92[ASN][1000 genomes]
rs13171635	0.97[ASN][1000 genomes]
rs1511344	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1511345	0.96[ASN][1000 genomes]
rs1543066	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1858309	0.84[ASN][1000 genomes]
rs2048451	0.91[ASN][1000 genomes]
rs2048452	0.91[ASN][1000 genomes]
rs2973441	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4019243	0.94[ASN][1000 genomes]
rs4019302	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4364415	0.91[ASN][1000 genomes]
rs4377733	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4424024	0.86[ASN][1000 genomes]
rs4518439	0.82[ASN][1000 genomes]
rs6859170	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6882172	0.90[ASN][1000 genomes]
rs6885341	0.91[ASN][1000 genomes]
rs6888389	0.90[ASN][1000 genomes]
rs6888674	0.90[ASN][1000 genomes]
rs6889197	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6897578	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6898622	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7709572	0.86[ASN][1000 genomes]
rs7719516	0.87[ASN][1000 genomes]
rs7724489	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90576800-90583800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:90577400-90580400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:90577400-90580400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:90577400-90580800	Enhancers	Hela-S3	cervix
5	chr5:90577400-90581000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:90577600-90583800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:90577800-90583800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:90579200-90580400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:90579200-90580400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:90579200-90580400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:90579200-90580400	Enhancers	Osteobl	bone
12	chr5:90579200-90580600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:90579400-90580400	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr5:90579400-90580400	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr5:90579400-90580400	Enhancers	NHDF-Ad	bronchial
16	chr5:90579600-90580400	Enhancers	Colon Smooth Muscle	Colon
17	chr5:90579600-90580400	Enhancers	NHLF	lung
18	chr5:90579800-90584800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr5:90580000-90583800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:90580200-90580400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:90580200-90584800	Weak transcription	Small Intestine	intestine

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