Variant report

Variant	rs10462343
Chromosome Location	chr5:90572562-90572563
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90559982..90565400-chr5:90570467..90573729,4	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10038090	0.89[ASN][1000 genomes]
rs10061355	0.92[ASN][1000 genomes]
rs10462492	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10474346	0.92[ASN][1000 genomes]
rs10474347	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10805873	0.80[ASN][1000 genomes]
rs12697807	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13171635	0.91[ASN][1000 genomes]
rs1511344	0.90[ASN][1000 genomes]
rs1511345	0.93[ASN][1000 genomes]
rs1543066	0.89[ASN][1000 genomes]
rs1858309	0.89[ASN][1000 genomes]
rs2048451	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2048452	0.96[ASN][1000 genomes]
rs2973441	0.88[ASN][1000 genomes]
rs4019243	0.90[ASN][1000 genomes]
rs4019302	0.89[ASN][1000 genomes]
rs4364415	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4377733	0.99[ASN][1000 genomes]
rs4424024	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4518439	0.86[ASN][1000 genomes]
rs6859170	0.97[ASN][1000 genomes]
rs6869552	0.91[ASN][1000 genomes]
rs6882172	0.97[ASN][1000 genomes]
rs6885341	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6888389	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6888674	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6889197	0.96[ASN][1000 genomes]
rs6897578	0.91[ASN][1000 genomes]
rs6898622	0.93[ASN][1000 genomes]
rs7709572	0.90[ASN][1000 genomes]
rs7719516	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7724489	0.90[ASN][1000 genomes]
rs997737	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90562600-90573200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:90565000-90575200	Weak transcription	Brain Anterior Caudate	brain
3	chr5:90566000-90573800	Weak transcription	Fetal Thymus	thymus
4	chr5:90568200-90575000	Weak transcription	NHDF-Ad	bronchial
5	chr5:90568200-90575200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr5:90568800-90572800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:90569000-90573000	Weak transcription	Hela-S3	cervix
8	chr5:90569000-90575800	Weak transcription	HSMM	muscle
9	chr5:90569200-90572800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:90569200-90573200	Weak transcription	K562	blood
11	chr5:90569200-90573400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:90569200-90573400	Weak transcription	Osteobl	bone
13	chr5:90569200-90573600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:90569200-90573600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:90569200-90574400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr5:90569200-90574400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:90569200-90575200	Weak transcription	Fetal Heart	heart
18	chr5:90569200-90575200	Weak transcription	Psoas Muscle	Psoas
19	chr5:90569200-90575200	Weak transcription	NH-A	brain
20	chr5:90572200-90575200	Weak transcription	Right Atrium	heart

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