Variant report

Variant	rs10437509
Chromosome Location	chr10:90730374-90730375
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90724704..90726624-chr10:90728544..90730480,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11202913	1.00[EUR][1000 genomes]
rs59486418	1.00[EUR][1000 genomes]
rs7077376	1.00[EUR][1000 genomes]
rs74147450	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv825504	chr10:90730230-90730707	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90713600-90733800	Weak transcription	HSMM	muscle
2	chr10:90723000-90734400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr10:90723400-90733800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr10:90724400-90731000	Enhancers	Fetal Lung	lung
5	chr10:90724600-90734400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:90724800-90734000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr10:90724800-90739000	Weak transcription	Small Intestine	intestine
8	chr10:90725000-90734400	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:90725000-90734400	Weak transcription	Hela-S3	cervix
10	chr10:90725400-90730800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:90726800-90731000	Weak transcription	NHLF	lung
12	chr10:90728400-90731600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:90728600-90731200	Weak transcription	Osteobl	bone
14	chr10:90728800-90731400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr10:90728800-90731600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:90729000-90730800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:90729000-90730800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:90729000-90731400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:90729200-90731000	Weak transcription	Fetal Stomach	stomach
20	chr10:90729200-90731400	Weak transcription	Aorta	Aorta
21	chr10:90729200-90734200	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:90729400-90730800	Weak transcription	NHDF-Ad	bronchial
23	chr10:90729800-90731000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr10:90730000-90732000	Enhancers	Ovary	ovary
25	chr10:90730000-90734600	Enhancers	Colon Smooth Muscle	Colon

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