Variant report

Variant	rs11202913
Chromosome Location	chr10:90725564-90725565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90724704..90726624-chr10:90728544..90730480,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10437509	1.00[EUR][1000 genomes]
rs59486418	1.00[EUR][1000 genomes]
rs74147450	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90713600-90733800	Weak transcription	HSMM	muscle
2	chr10:90721400-90728000	Weak transcription	NHDF-Ad	bronchial
3	chr10:90722200-90729800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:90723000-90734400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:90723400-90733800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr10:90724200-90726800	Enhancers	Fetal Muscle Leg	muscle
7	chr10:90724400-90725800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:90724400-90726000	Enhancers	Stomach Smooth Muscle	stomach
9	chr10:90724400-90731000	Enhancers	Fetal Lung	lung
10	chr10:90724600-90725800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:90724600-90727800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:90724600-90734400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:90724800-90725600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:90724800-90734000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:90724800-90739000	Weak transcription	Small Intestine	intestine
16	chr10:90725000-90726400	Weak transcription	NHLF	lung
17	chr10:90725000-90734400	Enhancers	Rectal Smooth Muscle	rectum
18	chr10:90725000-90734400	Weak transcription	Hela-S3	cervix
19	chr10:90725200-90725600	Enhancers	Left Ventricle	heart
20	chr10:90725200-90725800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr10:90725200-90725800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:90725200-90725800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr10:90725200-90725800	Enhancers	Ovary	ovary
24	chr10:90725200-90727400	Enhancers	Fetal Stomach	stomach
25	chr10:90725400-90725600	Enhancers	Aorta	Aorta
26	chr10:90725400-90725600	Enhancers	Osteobl	bone
27	chr10:90725400-90725800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr10:90725400-90725800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr10:90725400-90726000	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr10:90725400-90726400	Weak transcription	Placenta	Placenta
31	chr10:90725400-90726400	Weak transcription	Right Atrium	heart
32	chr10:90725400-90726600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:90725400-90728200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:90725400-90729000	Enhancers	Colon Smooth Muscle	Colon
35	chr10:90725400-90730800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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