Variant report

Variant	rs10437573
Chromosome Location	chr11:92911934-92911935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11020219	0.91[AFR][1000 genomes]
rs11020220	0.86[AFR][1000 genomes]
rs12270138	0.80[AFR][1000 genomes]
rs12275035	0.82[AFR][1000 genomes]
rs12296063	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898176	chr11:92877533-92965312	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898177	chr11:92877533-92971874	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv898178	chr11:92881933-92949447	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv898179	chr11:92881933-92956873	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1047828	chr11:92886648-92915055	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1045544	chr11:92889187-92915055	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1041794	chr11:92893654-92915055	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv818858	chr11:92898342-92932229	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	esv2757465	chr11:92898342-92934137	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
11	esv2759853	chr11:92898342-92934137	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92868400-92914600	Weak transcription	Brain Substantia Nigra	brain
2	chr11:92877800-92915000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:92889800-92913600	Weak transcription	Spleen	Spleen
4	chr11:92891600-92925400	Weak transcription	Fetal Heart	heart
5	chr11:92891800-92929800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr11:92895400-92920000	Weak transcription	Psoas Muscle	Psoas
7	chr11:92895400-92921400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:92897200-92914000	Weak transcription	Small Intestine	intestine
9	chr11:92897800-92917200	Weak transcription	NHDF-Ad	bronchial
10	chr11:92898000-92912000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:92898200-92919800	Weak transcription	Brain Angular Gyrus	brain
12	chr11:92898200-92920000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr11:92898400-92912000	Weak transcription	HepG2	liver
14	chr11:92899600-92912200	Weak transcription	HSMM	muscle
15	chr11:92900600-92929600	Weak transcription	HUVEC	blood vessel
16	chr11:92909800-92912600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
17	chr11:92909800-92914600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:92910000-92912400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:92910000-92912600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:92910000-92912600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
21	chr11:92910000-92912600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
22	chr11:92910000-92912600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:92910000-92912600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:92910000-92912600	ZNF genes & repeats	Brain Germinal Matrix	brain
25	chr11:92910000-92912800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
26	chr11:92910000-92912800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
27	chr11:92910000-92913000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
28	chr11:92910000-92913000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:92910000-92913200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:92910000-92913200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
31	chr11:92910000-92913600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:92910000-92913800	ZNF genes & repeats	Dnd41	blood
33	chr11:92910000-92915000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
34	chr11:92910200-92912200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:92910200-92913200	ZNF genes & repeats	Fetal Brain Female	brain
36	chr11:92910200-92913800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:92910200-92914000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:92910400-92912200	Strong transcription	Thymus	Thymus
39	chr11:92910400-92912400	Strong transcription	Brain Anterior Caudate	brain
40	chr11:92910400-92912600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:92910400-92912600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
42	chr11:92910400-92912600	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:92910400-92912800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:92910400-92912800	ZNF genes & repeats	Fetal Muscle Leg	muscle
45	chr11:92910400-92913000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:92910400-92913000	Strong transcription	Primary T cells from cord blood	blood
47	chr11:92910400-92913200	Strong transcription	Liver	Liver
48	chr11:92910400-92913200	Strong transcription	Brain Cingulate Gyrus	brain
49	chr11:92910400-92913200	Strong transcription	Brain Hippocampus Middle	brain
50	chr11:92910600-92912000	Strong transcription	Fetal Lung	lung

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