Variant report

Variant	rs12296063
Chromosome Location	chr11:92920402-92920403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr11:92920333-92920975	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
SLC36A4	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10437573	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898176	chr11:92877533-92965312	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898177	chr11:92877533-92971874	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv898178	chr11:92881933-92949447	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv898179	chr11:92881933-92956873	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv818858	chr11:92898342-92932229	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	esv2757465	chr11:92898342-92934137	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
8	esv2759853	chr11:92898342-92934137	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
9	esv2829957	chr11:92915544-92932229	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	esv33564	chr11:92918600-92936545	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Obesity-related traits	23251661	GWAS catalog

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92891600-92925400	Weak transcription	Fetal Heart	heart
2	chr11:92891800-92929800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:92895400-92921400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:92900600-92929600	Weak transcription	HUVEC	blood vessel
5	chr11:92911200-92930000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:92911400-92925400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:92911600-92920800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:92911600-92925400	Weak transcription	Esophagus	oesophagus
9	chr11:92911600-92925400	Weak transcription	Gastric	stomach
10	chr11:92911600-92929800	Weak transcription	Right Ventricle	heart
11	chr11:92911600-92930000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:92911800-92929800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:92911800-92930200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:92912200-92920800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:92912200-92929800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr11:92912200-92929800	Weak transcription	Thymus	Thymus
17	chr11:92912200-92930000	Weak transcription	Fetal Stomach	stomach
18	chr11:92912400-92920600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:92912400-92929800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:92912400-92930000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:92912600-92920600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:92912600-92920800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:92912600-92920800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr11:92912600-92920800	Weak transcription	Left Ventricle	heart
25	chr11:92912600-92921000	Weak transcription	Ovary	ovary
26	chr11:92912600-92923000	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:92912600-92924000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr11:92912600-92926800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr11:92912600-92928000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:92912800-92920600	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr11:92913000-92920800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr11:92913200-92929800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr11:92914000-92925200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr11:92914400-92924800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:92916200-92924600	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr11:92916200-92929800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr11:92917400-92922000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr11:92917600-92929800	Weak transcription	NHDF-Ad	bronchial
39	chr11:92917800-92929800	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr11:92917800-92929800	Weak transcription	HSMM	muscle
41	chr11:92918000-92924600	Weak transcription	Hela-S3	cervix
42	chr11:92918800-92920600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr11:92918800-92920600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:92918800-92920800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr11:92918800-92920800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:92919000-92920600	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr11:92919000-92920800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:92919000-92920800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:92919000-92924800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:92919000-92929000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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