Variant report

Variant	rs10438021
Chromosome Location	chr14:65038233-65038234
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10220523	0.90[AFR][1000 genomes]
rs12323549	0.83[AFR][1000 genomes]
rs28692729	0.88[AFR][1000 genomes]
rs7151871	0.84[AFR][1000 genomes]
rs7157936	0.96[AFR][1000 genomes]
rs8020501	0.96[AFR][1000 genomes]
rs9285591	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65021600-65047600	Weak transcription	Pancreas	Pancrea
2	chr14:65028200-65039400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr14:65029400-65039400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:65030600-65039600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:65031000-65039000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr14:65033400-65040000	Weak transcription	Gastric	stomach
7	chr14:65033600-65039200	Weak transcription	Aorta	Aorta
8	chr14:65033600-65039400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:65033800-65039400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:65033800-65039400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr14:65033800-65039400	Weak transcription	Brain Angular Gyrus	brain
12	chr14:65033800-65040000	Weak transcription	Esophagus	oesophagus
13	chr14:65034000-65039000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr14:65034400-65039200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:65034800-65039200	Weak transcription	Fetal Muscle Leg	muscle
16	chr14:65035800-65039400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:65036000-65041600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:65036200-65038600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr14:65036200-65038800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr14:65036200-65039400	Weak transcription	Adipose Nuclei	Adipose
21	chr14:65036200-65039400	Weak transcription	Brain Germinal Matrix	brain
22	chr14:65036200-65039600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr14:65036200-65039600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr14:65036200-65044000	Weak transcription	Fetal Kidney	kidney
25	chr14:65036400-65039000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr14:65036400-65039000	Weak transcription	Brain Anterior Caudate	brain
27	chr14:65036400-65039000	Weak transcription	Brain Hippocampus Middle	brain
28	chr14:65036400-65039000	Weak transcription	Colon Smooth Muscle	Colon
29	chr14:65036400-65039200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr14:65036400-65039200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr14:65036400-65039400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:65036400-65039400	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr14:65036400-65039600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr14:65036600-65039000	Weak transcription	Fetal Lung	lung
35	chr14:65036600-65039400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr14:65036800-65039000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr14:65036800-65039200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr14:65037000-65039200	Weak transcription	A549	lung
39	chr14:65037000-65039400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr14:65037000-65039400	Weak transcription	Psoas Muscle	Psoas
41	chr14:65037000-65039400	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr14:65037000-65039600	Weak transcription	HSMMtube	muscle
43	chr14:65037400-65039200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr14:65037400-65039400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr14:65037600-65039000	Weak transcription	Brain Substantia Nigra	brain
46	chr14:65037600-65039200	Weak transcription	Hela-S3	cervix

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