Variant report

Variant	rs7151871
Chromosome Location	chr14:64975456-64975457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:16)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:16 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr14:64975053-64975466	GM12891	blood:	n/a	n/a
2	SPI1	chr14:64975189-64975473	GM12878	blood:	n/a	n/a
3	IRF4	chr14:64974934-64975527	GM12878	blood:	n/a	n/a
4	BCL3	chr14:64975068-64975473	GM12878	blood:	n/a	n/a
5	NFATC1	chr14:64974982-64975810	GM12878	blood:	n/a	n/a
6	NFATC1	chr14:64974631-64975801	GM12878	blood:	n/a	n/a
7	NFIC	chr14:64974945-64975580	GM12878	blood:	n/a	n/a
8	MTA3	chr14:64974230-64975815	GM12878	blood:	n/a	n/a
9	ATF2	chr14:64974931-64975485	GM12878	blood:	n/a	n/a
10	SPI1	chr14:64975017-64975484	GM12878	blood:	n/a	n/a
11	POLR2A	chr14:64974968-64976293	GM12892	blood:	n/a	n/a
12	POLR2A	chr14:64974140-64976033	A549	lung:	n/a	n/a
13	RUNX3	chr14:64974986-64975479	GM12878	blood:	n/a	n/a
14	ATF2	chr14:64975025-64975483	GM12878	blood:	n/a	n/a
15	SPI1	chr14:64975110-64975472	HL-60	blood:	n/a	n/a
16	NFIC	chr14:64974938-64975540	GM12878	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:64973370..64976227-chr20:52238868..52240910,2	MCF-7	breast:
2	chr14:64952330..64955037-chr14:64972049..64976293,4	K562	blood:
3	chr14:64973577..64975906-chr14:65136944..65139422,2	MCF-7	breast:
4	chr14:64974117..64976754-chr14:65005899..65008393,2	MCF-7	breast:
5	chr14:64959822..64962033-chr14:64973410..64976563,3	K562	blood:
6	chr14:64952581..64955037-chr14:64973773..64976293,2	K562	blood:
7	chr14:64967941..64976890-chr14:65001097..65012463,31	MCF-7	breast:
8	chr14:64812043..64814935-chr14:64975290..64978233,2	K562	blood:

No data

Variant related genes	Relation type
ZBTB25	TF binding region
ENSG00000259116	Chromatin interaction
ENSG00000259160	Chromatin interaction
ENSG00000126803	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10220523	0.94[AFR][1000 genomes]
rs10438021	0.84[AFR][1000 genomes]
rs10813	0.82[AFR][1000 genomes]
rs12323549	0.90[AFR][1000 genomes]
rs28692729	0.96[AFR][1000 genomes]
rs7157936	0.84[AFR][1000 genomes]
rs8016632	0.82[ASW][hapmap];0.82[YRI][hapmap]
rs8020501	0.84[AFR][1000 genomes]
rs9285591	1.00[YRI][hapmap];0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521823	chr14:64969342-64995694	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64972400-64975800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:64972800-64975600	Weak transcription	Esophagus	oesophagus
3	chr14:64972800-64975600	Weak transcription	Gastric	stomach
4	chr14:64972800-64975800	Weak transcription	Lung	lung
5	chr14:64972800-64976200	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr14:64972800-64976400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr14:64972800-64977000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:64972800-64978800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr14:64972800-64979200	Enhancers	Small Intestine	intestine
10	chr14:64972800-64988400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:64972800-64991600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:64973000-64975600	Weak transcription	Placenta	Placenta
13	chr14:64973000-64976000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr14:64973000-64976400	Enhancers	Primary hematopoietic stem cells	blood
15	chr14:64973000-64979400	Enhancers	Primary B cells from peripheral blood	blood
16	chr14:64973200-64976000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr14:64973200-64976000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr14:64973200-64976200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr14:64973200-64987800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr14:64973400-64975800	Enhancers	Placenta Amnion	Placenta Amnion
21	chr14:64973400-64976000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr14:64973400-64976200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr14:64973400-64976200	Enhancers	Stomach Mucosa	stomach
24	chr14:64973600-64975800	Enhancers	Fetal Heart	heart
25	chr14:64973600-64976000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr14:64973600-64976000	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr14:64973600-64976200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr14:64973600-64976200	Enhancers	Brain Hippocampus Middle	brain
29	chr14:64973600-64976400	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr14:64973800-64975600	Weak transcription	Aorta	Aorta
31	chr14:64973800-64975800	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr14:64973800-64976000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr14:64973800-64976000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr14:64973800-64976000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr14:64973800-64976000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr14:64973800-64976000	Enhancers	Liver	Liver
37	chr14:64973800-64976000	Enhancers	Brain Germinal Matrix	brain
38	chr14:64973800-64976200	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr14:64973800-64976200	Enhancers	Colonic Mucosa	Colon
40	chr14:64973800-64976200	Enhancers	Fetal Thymus	thymus
41	chr14:64973800-64976200	Enhancers	Right Atrium	heart
42	chr14:64973800-64977200	Weak transcription	Fetal Kidney	kidney
43	chr14:64973800-64977600	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr14:64973800-64978000	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr14:64973800-64978400	Enhancers	HepG2	liver
46	chr14:64973800-64979400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr14:64973800-64980000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr14:64974000-64975800	Genic enhancers	HSMM	muscle
49	chr14:64974000-64984400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr14:64974200-64975800	Enhancers	Brain Inferior Temporal Lobe	brain

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