Variant report

Variant	rs10438157
Chromosome Location	chr14:68900873-68900874
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12897307	0.80[EUR][1000 genomes]
rs2331703	0.82[EUR][1000 genomes]
rs2331704	0.82[EUR][1000 genomes]
rs4902582	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4902587	0.82[EUR][1000 genomes]
rs4902588	0.82[EUR][1000 genomes]
rs4902589	0.82[EUR][1000 genomes]
rs9743896	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68886600-68903200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68888000-68901000	Weak transcription	Primary T cells from cord blood	blood
3	chr14:68895200-68914400	Weak transcription	A549	lung
4	chr14:68900600-68901200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr14:68900600-68901200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr14:68900600-68901400	Enhancers	Primary T cells fromperipheralblood	blood
7	chr14:68900600-68901400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr14:68900600-68901400	Enhancers	Fetal Thymus	thymus
9	chr14:68900800-68901200	Enhancers	Placenta	Placenta
10	chr14:68900800-68901400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:68900800-68901400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr14:68900800-68901400	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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