Variant report

Variant	rs4902589
Chromosome Location	chr14:68908716-68908717
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68905969..68908035-chr14:68908553..68911248,2	MCF-7	breast:
2	chr14:68607279..68608954-chr14:68906773..68909021,2	MCF-7	breast:
3	chr14:68863198..68864811-chr14:68906969..68909048,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10438157	0.82[EUR][1000 genomes]
rs10454686	0.85[CEU][hapmap]
rs10747299	0.85[ASN][1000 genomes]
rs11158737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158742	1.00[JPT][hapmap]
rs12435006	1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[ASN][1000 genomes]
rs12588330	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12897307	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12897678	0.85[EUR][1000 genomes]
rs17755674	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1956538	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2064910	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2331703	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2331704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2525507	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2753403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842320	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3784118	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3966077	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4899241	1.00[JPT][hapmap]
rs4899243	1.00[JPT][hapmap]
rs4902571	0.90[CEU][hapmap]
rs4902578	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902580	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4902581	1.00[JPT][hapmap]
rs4902582	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145422	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs8003606	1.00[CHB][hapmap]
rs8013026	0.85[CEU][hapmap]
rs8015516	0.90[CEU][hapmap]
rs8019592	1.00[JPT][hapmap]
rs9323510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323511	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9743896	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs975422	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68895200-68914400	Weak transcription	A549	lung
2	chr14:68903000-68911200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:68904000-68910000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:68906200-68911200	Weak transcription	Spleen	Spleen
5	chr14:68906200-68911400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:68906200-68912200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:68906400-68911400	Weak transcription	Fetal Lung	lung
8	chr14:68906400-68912000	Enhancers	NHDF-Ad	bronchial
9	chr14:68906600-68909600	Weak transcription	Psoas Muscle	Psoas
10	chr14:68906800-68911200	Weak transcription	Right Atrium	heart
11	chr14:68906800-68916000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:68907000-68909600	Weak transcription	Adipose Nuclei	Adipose
13	chr14:68907000-68911200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr14:68907200-68911200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr14:68907400-68909800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:68907600-68908800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:68907800-68909600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr14:68907800-68911200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr14:68908000-68909000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr14:68908000-68911200	Weak transcription	Liver	Liver
21	chr14:68908000-68913000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr14:68908400-68908800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr14:68908400-68909000	Enhancers	Colon Smooth Muscle	Colon
24	chr14:68908600-68908800	Enhancers	Fetal Muscle Leg	muscle
25	chr14:68908600-68908800	Enhancers	Small Intestine	intestine
26	chr14:68908600-68908800	Enhancers	Osteobl	bone
27	chr14:68908600-68909000	Enhancers	Primary B cells from peripheral blood	blood
28	chr14:68908600-68910200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr14:68908600-68912200	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr14:68908600-68917400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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