Variant report

Variant	rs10454686
Chromosome Location	chr14:68839917-68839918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68831265..68833449-chr14:68839230..68840971,2	K562	blood:
2	chr14:68839158..68842071-chr14:69443455..69446162,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072110	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10132981	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11158737	0.85[CEU][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12589872	0.84[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17755674	0.90[CEU][hapmap]
rs1956538	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1964854	0.95[EUR][1000 genomes]
rs2064910	0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2331703	0.84[CEU][hapmap]
rs2331704	0.85[CEU][hapmap]
rs2525507	0.85[CEU][hapmap]
rs2753403	0.85[CEU][hapmap]
rs2842320	0.85[CEU][hapmap]
rs2877475	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3784118	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3966077	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4902571	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4902578	0.90[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4902587	0.85[CEU][hapmap]
rs4902588	0.85[CEU][hapmap]
rs4902589	0.85[CEU][hapmap]
rs7145422	0.93[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8013026	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8015516	0.94[CEU][hapmap];0.99[EUR][1000 genomes]
rs9323510	0.85[CEU][hapmap];0.88[AMR][1000 genomes]
rs975422	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68831800-68841600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:68831800-68844200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:68832000-68843200	Weak transcription	Placenta	Placenta
4	chr14:68832000-68843800	Weak transcription	Ovary	ovary
5	chr14:68832000-68844200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:68832000-68851600	Weak transcription	Lung	lung
7	chr14:68832200-68841600	Weak transcription	Pancreas	Pancrea
8	chr14:68832200-68844200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:68832200-68844200	Weak transcription	Brain Germinal Matrix	brain
10	chr14:68833000-68845200	Enhancers	Primary B cells from peripheral blood	blood
11	chr14:68833600-68842200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr14:68834000-68843400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr14:68834400-68841400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:68834400-68846400	Weak transcription	Fetal Heart	heart
15	chr14:68834600-68842200	Weak transcription	HSMM	muscle
16	chr14:68835000-68841600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:68835200-68840200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr14:68835200-68843600	Weak transcription	Brain Anterior Caudate	brain
19	chr14:68835400-68840000	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr14:68835600-68843800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr14:68836400-68840800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr14:68836400-68843200	Weak transcription	Spleen	Spleen
23	chr14:68836400-68847000	Weak transcription	Aorta	Aorta
24	chr14:68836600-68840800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr14:68836600-68840800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr14:68836600-68842000	Weak transcription	Thymus	Thymus
27	chr14:68836800-68840800	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr14:68836800-68843200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr14:68836800-68843800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr14:68837000-68840800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr14:68837000-68841400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr14:68837200-68840600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr14:68837200-68842400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr14:68837200-68843000	Weak transcription	Brain Substantia Nigra	brain
35	chr14:68837200-68843200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr14:68837400-68840600	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr14:68837400-68840600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr14:68837400-68840800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr14:68837400-68841000	Weak transcription	Fetal Thymus	thymus
40	chr14:68837400-68841000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr14:68837400-68841800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr14:68837400-68842600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr14:68837400-68842600	Weak transcription	Fetal Stomach	stomach
44	chr14:68837400-68842800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr14:68837400-68843200	Weak transcription	Fetal Kidney	kidney
46	chr14:68837400-68843600	Weak transcription	Fetal Intestine Large	intestine
47	chr14:68837400-68843600	Weak transcription	Fetal Intestine Small	intestine
48	chr14:68837400-68844000	Weak transcription	Stomach Mucosa	stomach
49	chr14:68837600-68840800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr14:68837600-68841000	Weak transcription	Fetal Lung	lung

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