Variant report

Variant	rs4902571
Chromosome Location	chr14:68819234-68819235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68818141..68819733-chr14:68823744..68826518,2	MCF-7	breast:
2	chr14:68819003..68821969-chr14:68824921..68827031,3	MCF-7	breast:
3	chr14:68816741..68820574-chr14:68865040..68867633,3	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10132981	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10454686	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11158737	0.90[CEU][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12589872	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12889206	1.00[MEX][hapmap]
rs17755674	0.84[CEU][hapmap]
rs1956538	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1964854	0.96[EUR][1000 genomes]
rs2064910	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2331703	0.89[CEU][hapmap];1.00[MEX][hapmap]
rs2331704	0.90[CEU][hapmap];1.00[MEX][hapmap]
rs2525507	0.90[CEU][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs2753403	0.90[CEU][hapmap];0.86[MEX][hapmap]
rs2842320	0.90[CEU][hapmap];0.86[MEX][hapmap]
rs2877475	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3784118	0.83[CEU][hapmap];0.81[AMR][1000 genomes]
rs3966077	0.94[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4899243	0.85[MEX][hapmap]
rs4902578	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4902587	0.90[CEU][hapmap]
rs4902588	0.90[CEU][hapmap]
rs4902589	0.90[CEU][hapmap]
rs6573834	1.00[MEX][hapmap]
rs7145422	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7150454	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs8009876	1.00[ASW][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs8013026	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8015516	1.00[CEU][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8019592	0.83[GIH][hapmap]
rs9323510	0.90[CEU][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs975422	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68811000-68829800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr14:68813600-68825600	Weak transcription	Primary B cells from cord blood	blood
3	chr14:68814200-68820400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:68816400-68826000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:68816400-68826200	Weak transcription	Pancreas	Pancrea
6	chr14:68816600-68825600	Weak transcription	Fetal Thymus	thymus
7	chr14:68816600-68826600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr14:68816800-68825000	Weak transcription	Aorta	Aorta
9	chr14:68817400-68824400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr14:68817400-68825000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:68817400-68826200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr14:68817800-68819400	Weak transcription	Fetal Muscle Leg	muscle
13	chr14:68818400-68824400	Weak transcription	Fetal Kidney	kidney
14	chr14:68818600-68819600	Weak transcription	Fetal Lung	lung
15	chr14:68818600-68825600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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