Variant report

Variant	rs3784118
Chromosome Location	chr14:68864870-68864871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68863962..68866276-chr14:68924626..68928147,6	MCF-7	breast:
2	chr14:68863838..68866613-chr14:68869983..68873336,6	MCF-7	breast:
3	chr14:68862313..68866033-chr14:69260307..69264039,7	MCF-7	breast:
4	chr14:68859762..68864000-chr14:68864300..68866609,3	K562	blood:
5	chr14:68858725..68872867-chr14:69250734..69263104,36	MCF-7	breast:
6	chr14:68749573..68752589-chr14:68864032..68866537,3	MCF-7	breast:
7	chr14:68862930..68865913-chr14:68933149..68936719,4	MCF-7	breast:
8	chr14:68864311..68866713-chr14:68933323..68935955,2	MCF-7	breast:
9	chr14:68863146..68866898-chr14:68882756..68885018,4	MCF-7	breast:
10	chr14:68825944..68827460-chr14:68863306..68865139,2	MCF-7	breast:
11	chr14:68862766..68869873-chr14:69251663..69259874,10	MCF-7	breast:
12	chr14:68857574..68861262-chr14:68863734..68866586,4	K562	blood:
13	chr14:68863006..68865932-chr14:69077018..69079780,3	MCF-7	breast:
14	chr14:68863291..68866067-chr14:68920468..68924017,3	MCF-7	breast:
15	chr14:68773029..68777937-chr14:68858584..68866534,13	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10132981	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10454686	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11158737	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158742	1.00[JPT][hapmap]
rs12435006	1.00[JPT][hapmap]
rs12588330	1.00[JPT][hapmap]
rs12589872	0.81[AMR][1000 genomes]
rs12897307	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17755674	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1956538	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2064910	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2331703	0.83[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2331704	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2525507	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs2753403	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2842320	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs3966077	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899241	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4899243	1.00[JPT][hapmap]
rs4902571	0.83[CEU][hapmap];0.81[AMR][1000 genomes]
rs4902578	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902580	1.00[JPT][hapmap]
rs4902581	1.00[JPT][hapmap]
rs4902582	0.84[ASN][1000 genomes]
rs4902587	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4902588	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4902589	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7145422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003606	1.00[CHB][hapmap]
rs8013026	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8015516	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs8019592	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9323510	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9743896	0.84[ASN][1000 genomes]
rs975422	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68856600-68865400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:68857000-68865800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr14:68858000-68865200	Enhancers	NHLF	lung
4	chr14:68858000-68865800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr14:68858200-68865600	Enhancers	Placenta	Placenta
6	chr14:68858400-68865200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr14:68858800-68865600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:68859000-68865400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:68859000-68865800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr14:68859200-68865200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:68859800-68871400	Weak transcription	Gastric	stomach
12	chr14:68860600-68865600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:68860800-68865000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr14:68860800-68865400	Enhancers	NHDF-Ad	bronchial
15	chr14:68861000-68865400	Enhancers	Osteobl	bone
16	chr14:68861200-68866400	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr14:68861200-68869400	Weak transcription	Liver	Liver
18	chr14:68861800-68866800	Weak transcription	Psoas Muscle	Psoas
19	chr14:68861800-68871400	Weak transcription	Right Ventricle	heart
20	chr14:68862000-68865800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:68862000-68866800	Weak transcription	Brain Angular Gyrus	brain
22	chr14:68862000-68870400	Weak transcription	Brain Substantia Nigra	brain
23	chr14:68862200-68865200	Enhancers	Fetal Kidney	kidney
24	chr14:68862400-68866000	Enhancers	Colon Smooth Muscle	Colon
25	chr14:68862400-68866400	Weak transcription	Dnd41	blood
26	chr14:68862400-68868000	Weak transcription	Aorta	Aorta
27	chr14:68862600-68865600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:68862600-68866600	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr14:68862600-68869800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr14:68862800-68865000	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr14:68863000-68865400	Enhancers	HMEC	breast
32	chr14:68863200-68865400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr14:68863400-68865600	Enhancers	Fetal Intestine Small	intestine
34	chr14:68863600-68865000	Enhancers	HepG2	liver
35	chr14:68863600-68865400	Enhancers	Ovary	ovary
36	chr14:68863600-68865600	Enhancers	Fetal Lung	lung
37	chr14:68863600-68865600	Enhancers	Fetal Muscle Leg	muscle
38	chr14:68863600-68865800	Enhancers	Fetal Intestine Large	intestine
39	chr14:68863600-68865800	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr14:68863600-68870000	Enhancers	Primary B cells from cord blood	blood
41	chr14:68863600-68877200	Enhancers	Primary B cells from peripheral blood	blood
42	chr14:68863800-68865000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr14:68863800-68865000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr14:68863800-68865000	Enhancers	Spleen	Spleen
45	chr14:68863800-68865200	Enhancers	Primary hematopoietic stem cells	blood
46	chr14:68863800-68865200	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr14:68863800-68865200	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr14:68863800-68865400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr14:68863800-68865400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr14:68863800-68865800	Enhancers	Adipose Nuclei	Adipose

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