Variant report

Variant	rs2064910
Chromosome Location	chr14:68852102-68852103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68850472..68852853-chr14:69251979..69254595,2	MCF-7	breast:
2	chr14:68850065..68853028-chr14:68854174..68855948,2	MCF-7	breast:
3	chr14:68846943..68849036-chr14:68850904..68853238,2	MCF-7	breast:
4	chr14:68849279..68853036-chr14:68925939..68929072,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10132981	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10454686	0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11158737	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11158742	1.00[JPT][hapmap]
rs12435006	1.00[JPT][hapmap]
rs12588330	1.00[JPT][hapmap]
rs12589872	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12897307	1.00[JPT][hapmap]
rs17755674	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1956538	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1964854	0.94[EUR][1000 genomes]
rs2331703	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs2331704	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2525507	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2753403	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2842320	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs2877475	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3784118	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3966077	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4899241	1.00[JPT][hapmap]
rs4899243	1.00[JPT][hapmap]
rs4902571	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4902578	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4902580	1.00[JPT][hapmap]
rs4902581	1.00[JPT][hapmap]
rs4902587	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4902588	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4902589	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7145422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8003606	1.00[CHB][hapmap]
rs8009876	1.00[YRI][hapmap]
rs8013026	0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8013184	0.85[ASN][1000 genomes]
rs8015516	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs8019592	1.00[JPT][hapmap]
rs9323510	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes]
rs975422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68844600-68858000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:68844600-68859200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:68844800-68853000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:68845200-68853200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:68845200-68853600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:68845200-68858800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:68845800-68853200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr14:68847600-68859000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr14:68847600-68862600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:68848000-68853800	Weak transcription	Osteobl	bone
11	chr14:68848200-68856600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:68848800-68857200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr14:68849400-68854600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr14:68850000-68852200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr14:68850000-68852200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr14:68850000-68852200	Enhancers	Fetal Thymus	thymus
17	chr14:68850000-68852400	Enhancers	Fetal Muscle Leg	muscle
18	chr14:68850000-68852400	Enhancers	Right Atrium	heart
19	chr14:68850000-68852600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr14:68850000-68855800	Enhancers	Rectal Smooth Muscle	rectum
21	chr14:68850200-68852200	Enhancers	Adipose Nuclei	Adipose
22	chr14:68850200-68852200	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr14:68850200-68852200	Enhancers	HepG2	liver
24	chr14:68850200-68852400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr14:68850200-68853800	Weak transcription	Liver	Liver
26	chr14:68850200-68861000	Enhancers	Colon Smooth Muscle	Colon
27	chr14:68850400-68852200	Enhancers	Placenta	Placenta
28	chr14:68850400-68852400	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr14:68850400-68854000	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr14:68850400-68854600	Enhancers	Fetal Heart	heart
31	chr14:68850400-68857600	Weak transcription	Small Intestine	intestine
32	chr14:68850800-68852200	Weak transcription	Brain Hippocampus Middle	brain
33	chr14:68850800-68853200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr14:68850800-68853200	Weak transcription	Brain Substantia Nigra	brain
35	chr14:68850800-68853200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr14:68850800-68853400	Weak transcription	Aorta	Aorta
37	chr14:68850800-68853600	Weak transcription	Primary T cells from cord blood	blood
38	chr14:68850800-68859000	Weak transcription	Primary B cells from peripheral blood	blood
39	chr14:68851000-68852400	Enhancers	Rectal Mucosa Donor 29	rectum
40	chr14:68851200-68852200	Active TSS	Fetal Brain Male	brain
41	chr14:68851200-68853600	Enhancers	Spleen	Spleen
42	chr14:68851400-68853200	Weak transcription	A549	lung
43	chr14:68851400-68853800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr14:68851400-68854200	Weak transcription	GM12878-XiMat	blood
45	chr14:68851400-68854600	Enhancers	Fetal Lung	lung
46	chr14:68851400-68857400	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr14:68851600-68852200	Enhancers	Lung	lung
48	chr14:68851600-68852400	Enhancers	Brain Anterior Caudate	brain
49	chr14:68851800-68852400	Genic enhancers	Fetal Stomach	stomach
50	chr14:68851800-68852400	Enhancers	Stomach Smooth Muscle	stomach

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