Variant report

Variant	rs4902581
Chromosome Location	chr14:68890793-68890794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10747299	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158737	1.00[JPT][hapmap]
rs11158742	1.00[JPT][hapmap]
rs12435006	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12588330	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12590319	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12897307	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17755674	1.00[JPT][hapmap]
rs1956538	1.00[JPT][hapmap]
rs2064910	1.00[JPT][hapmap]
rs2331703	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2331704	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2525507	1.00[JPT][hapmap]
rs2753403	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2842320	1.00[JPT][hapmap]
rs3784118	1.00[JPT][hapmap]
rs3966077	1.00[JPT][hapmap]
rs4899241	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4899243	1.00[JPT][hapmap]
rs4902578	1.00[JPT][hapmap]
rs4902580	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902582	0.85[ASN][1000 genomes]
rs4902587	1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4902588	1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4902589	1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7145422	1.00[JPT][hapmap]
rs7154175	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8003606	1.00[CHB][hapmap]
rs8013184	0.81[AMR][1000 genomes]
rs8019592	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9323510	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9743896	0.85[ASN][1000 genomes]
rs975422	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68882400-68893400	Weak transcription	Fetal Intestine Small	intestine
2	chr14:68884200-68890800	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:68885200-68893600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:68886200-68894800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:68886600-68903200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:68887800-68890800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:68888000-68891000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr14:68888000-68893400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr14:68888000-68901000	Weak transcription	Primary T cells from cord blood	blood
10	chr14:68888200-68891800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr14:68888200-68892600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr14:68888200-68893200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:68888800-68893600	Weak transcription	Lung	lung
14	chr14:68889000-68893600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:68890000-68891000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr14:68890000-68891000	Enhancers	Primary B cells from peripheral blood	blood
17	chr14:68890200-68891000	Enhancers	Primary B cells from cord blood	blood
18	chr14:68890200-68891400	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr14:68890600-68890800	Enhancers	Fetal Muscle Leg	muscle
20	chr14:68890600-68891200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr14:68890600-68891400	Enhancers	Sigmoid Colon	Sigmoid Colon

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