Variant report

Variant	rs8003606
Chromosome Location	chr14:68973250-68973251
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68957700..68966900-chr14:68968037..68976020,15	MCF-7	breast:
2	chr14:68973059..68975623-chr14:68975838..68977423,2	MCF-7	breast:
3	chr14:68968741..68971130-chr14:68972103..68973954,3	K562	blood:
4	chr14:68971123..68974039-chr14:68984609..68986451,2	MCF-7	breast:
5	chr14:68973167..68978172-chr14:69258473..69260680,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11158737	1.00[CHB][hapmap]
rs12435006	1.00[CHB][hapmap]
rs12588330	1.00[CHB][hapmap]
rs17755674	1.00[CHB][hapmap]
rs1956538	1.00[CHB][hapmap]
rs2064910	1.00[CHB][hapmap]
rs2331703	1.00[CHB][hapmap]
rs2331704	1.00[CHB][hapmap]
rs2525507	1.00[CHB][hapmap]
rs2753403	1.00[CHB][hapmap]
rs2842320	1.00[CHB][hapmap]
rs3784118	1.00[CHB][hapmap]
rs3966077	1.00[CHB][hapmap]
rs4899241	1.00[CHB][hapmap]
rs4899243	1.00[CHB][hapmap]
rs4902578	1.00[CHB][hapmap]
rs4902580	1.00[CHB][hapmap]
rs4902581	1.00[CHB][hapmap]
rs4902587	1.00[CHB][hapmap]
rs4902588	1.00[CHB][hapmap]
rs4902589	1.00[CHB][hapmap]
rs7145422	1.00[CHB][hapmap]
rs7154175	1.00[CHB][hapmap]
rs8019592	1.00[CHB][hapmap]
rs9323510	1.00[CHB][hapmap]
rs975422	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68965400-68974400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:68965400-68976800	Enhancers	Fetal Thymus	thymus
3	chr14:68967400-68973600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr14:68967400-68981600	Enhancers	Fetal Muscle Leg	muscle
5	chr14:68967400-68982400	Enhancers	Primary B cells from peripheral blood	blood
6	chr14:68967600-68973800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr14:68967600-68974200	Enhancers	Placenta	Placenta
8	chr14:68967800-68974400	Enhancers	Fetal Stomach	stomach
9	chr14:68968000-68991200	Enhancers	Fetal Lung	lung
10	chr14:68968200-68973600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr14:68968600-68974400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:68969000-68973400	Enhancers	Primary T cells fromperipheralblood	blood
13	chr14:68969800-68974800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:68970800-68973600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:68971000-68973600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:68971000-68973800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr14:68971000-68974000	Enhancers	Fetal Kidney	kidney
18	chr14:68971000-68983800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:68971400-68975400	Enhancers	Thymus	Thymus
20	chr14:68971600-68973400	Enhancers	H9 Cell Line	embryonic stem cell
21	chr14:68971600-68973400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr14:68971600-68974400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr14:68971600-68975200	Enhancers	Primary B cells from cord blood	blood
24	chr14:68971800-68973400	Enhancers	H1 Cell Line	embryonic stem cell
25	chr14:68971800-68973400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr14:68971800-68974600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr14:68971800-68975200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:68971800-68976200	Enhancers	Pancreas	Pancrea
29	chr14:68971800-68976800	Enhancers	Lung	lung
30	chr14:68971800-68981400	Enhancers	Fetal Muscle Trunk	muscle
31	chr14:68972000-68975400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr14:68972000-68975600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr14:68972000-68980200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr14:68972400-68974000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr14:68972400-68974400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr14:68972400-68974400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr14:68972400-68974800	Enhancers	NHDF-Ad	bronchial
38	chr14:68972600-68973400	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr14:68972600-68973600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr14:68972600-68973600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr14:68972600-68973600	Enhancers	Adipose Nuclei	Adipose
42	chr14:68972600-68973600	Enhancers	Psoas Muscle	Psoas
43	chr14:68972600-68973600	Enhancers	NHLF	lung
44	chr14:68972600-68973800	Enhancers	Muscle Satellite Cultured Cells	--
45	chr14:68972600-68973800	Enhancers	Rectal Smooth Muscle	rectum
46	chr14:68972600-68973800	Enhancers	NH-A	brain
47	chr14:68972600-68974000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr14:68972600-68974000	Enhancers	HUVEC	blood vessel
49	chr14:68972600-68974200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr14:68972600-68974200	Enhancers	Dnd41	blood

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