Variant report

Variant	rs3966077
Chromosome Location	chr14:68855370-68855371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68603181..68605739-chr14:68855222..68857366,2	MCF-7	breast:
2	chr14:68850065..68853028-chr14:68854174..68855948,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10132981	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10454686	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11158737	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158742	1.00[JPT][hapmap]
rs12435006	1.00[JPT][hapmap]
rs12588330	1.00[JPT][hapmap]
rs12589872	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12897307	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17755674	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1956538	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964854	0.92[EUR][1000 genomes]
rs2064910	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2331703	0.83[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2331704	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2525507	0.84[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2753403	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2842320	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs2877475	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3784118	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899241	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4899243	1.00[JPT][hapmap]
rs4902571	0.94[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4902578	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902580	1.00[JPT][hapmap]
rs4902581	1.00[JPT][hapmap]
rs4902582	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4902587	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4902588	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4902589	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7145422	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003606	1.00[CHB][hapmap]
rs8009876	1.00[YRI][hapmap]
rs8013026	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8015516	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs8019592	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9323510	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9743896	0.84[ASN][1000 genomes]
rs975422	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68844600-68858000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:68844600-68859200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:68845200-68858800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:68847600-68859000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr14:68847600-68862600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:68848200-68856600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:68848800-68857200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr14:68850000-68855800	Enhancers	Rectal Smooth Muscle	rectum
9	chr14:68850200-68861000	Enhancers	Colon Smooth Muscle	Colon
10	chr14:68850400-68857600	Weak transcription	Small Intestine	intestine
11	chr14:68850800-68859000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr14:68851400-68857400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr14:68851800-68858000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:68851800-68858400	Weak transcription	Fetal Intestine Large	intestine
15	chr14:68851800-68858800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr14:68851800-68859000	Weak transcription	Primary B cells from cord blood	blood
17	chr14:68851800-68859800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr14:68851800-68861000	Weak transcription	Stomach Mucosa	stomach
19	chr14:68852000-68857000	Weak transcription	NHDF-Ad	bronchial
20	chr14:68852000-68857800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr14:68852000-68858000	Weak transcription	Fetal Intestine Small	intestine
22	chr14:68852000-68858000	Weak transcription	Pancreas	Pancrea
23	chr14:68852000-68859000	Weak transcription	Left Ventricle	heart
24	chr14:68852000-68859000	Weak transcription	Right Ventricle	heart
25	chr14:68852000-68859400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr14:68852200-68858000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr14:68852200-68858200	Weak transcription	Placenta	Placenta
28	chr14:68852200-68859400	Weak transcription	Lung	lung
29	chr14:68852200-68864200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr14:68852400-68859000	Weak transcription	Right Atrium	heart
31	chr14:68852400-68862600	Enhancers	Fetal Stomach	stomach
32	chr14:68852600-68855600	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr14:68853600-68857200	Weak transcription	Fetal Muscle Leg	muscle
34	chr14:68853600-68859000	Weak transcription	Fetal Thymus	thymus
35	chr14:68853600-68859600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr14:68853600-68861000	Weak transcription	Spleen	Spleen
37	chr14:68853800-68857200	Weak transcription	Aorta	Aorta
38	chr14:68854000-68857400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr14:68854000-68857600	Weak transcription	Psoas Muscle	Psoas
40	chr14:68854000-68861400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr14:68854200-68855400	Weak transcription	Brain Hippocampus Middle	brain
42	chr14:68854200-68861600	Weak transcription	A549	lung
43	chr14:68854400-68857000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr14:68854400-68857200	Weak transcription	Liver	Liver
45	chr14:68854400-68857400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr14:68854400-68857400	Weak transcription	Osteobl	bone
47	chr14:68854400-68858000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr14:68854400-68858000	Weak transcription	NH-A	brain
49	chr14:68854400-68859000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr14:68854400-68859200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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