Variant report

Variant	rs1964854
Chromosome Location	chr14:68829522-68829523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68605282..68608015-chr14:68828516..68831935,3	MCF-7	breast:
2	chr14:68829073..68831953-chr14:68862651..68864586,2	MCF-7	breast:
3	chr14:68715271..68717103-chr14:68828305..68830296,2	MCF-7	breast:
4	chr14:68741974..68743530-chr14:68829514..68831281,2	MCF-7	breast:
5	chr14:68827778..68831796-chr14:69251511..69256304,4	MCF-7	breast:
6	chr14:68829028..68831413-chr14:69258975..69262628,4	MCF-7	breast:
7	chr14:68827902..68830472-chr14:68830504..68833278,2	MCF-7	breast:
8	chr14:68828824..68831409-chr14:69259339..69261614,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10132981	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10454686	0.95[EUR][1000 genomes]
rs12589872	0.95[EUR][1000 genomes]
rs1956538	0.92[EUR][1000 genomes]
rs2064910	0.94[EUR][1000 genomes]
rs2877475	0.88[EUR][1000 genomes]
rs3966077	0.92[EUR][1000 genomes]
rs4902571	0.96[EUR][1000 genomes]
rs4902578	0.82[EUR][1000 genomes]
rs7145422	0.91[EUR][1000 genomes]
rs8013026	0.96[EUR][1000 genomes]
rs8015516	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs975422	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68811000-68829800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr14:68825600-68832000	Enhancers	Primary B cells from peripheral blood	blood
3	chr14:68825800-68830200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:68826200-68829600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:68826200-68835400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr14:68826400-68830200	Weak transcription	Fetal Brain Male	brain
7	chr14:68826600-68829600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr14:68826800-68829600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:68826800-68829600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr14:68826800-68830200	Weak transcription	Brain Germinal Matrix	brain
11	chr14:68826800-68830200	Weak transcription	Colonic Mucosa	Colon
12	chr14:68827000-68829600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr14:68827000-68829600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr14:68827000-68830200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr14:68827000-68830200	Weak transcription	Fetal Brain Female	brain
16	chr14:68827000-68831800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr14:68827200-68829600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:68827200-68829600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr14:68827200-68829600	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr14:68827200-68829600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:68827200-68829600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr14:68827200-68829800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr14:68827200-68830200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:68827200-68830200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr14:68827200-68830200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr14:68827200-68830200	Weak transcription	Placenta	Placenta
27	chr14:68827200-68830200	Weak transcription	Fetal Stomach	stomach
28	chr14:68827200-68830200	Weak transcription	Lung	lung
29	chr14:68827200-68830200	Weak transcription	Spleen	Spleen
30	chr14:68827200-68830400	Weak transcription	Fetal Kidney	kidney
31	chr14:68827200-68830600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr14:68827200-68831400	Weak transcription	Adipose Nuclei	Adipose
33	chr14:68827200-68831600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr14:68827200-68831600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr14:68827200-68831600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr14:68827200-68831800	Weak transcription	Gastric	stomach
37	chr14:68827200-68833000	Weak transcription	Psoas Muscle	Psoas
38	chr14:68827200-68833400	Weak transcription	Esophagus	oesophagus
39	chr14:68827200-68834200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr14:68827200-68834400	Weak transcription	Small Intestine	intestine
41	chr14:68827200-68834800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr14:68827400-68829600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr14:68827400-68829600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr14:68827400-68829800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr14:68827400-68830200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr14:68827400-68830200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr14:68827400-68830800	Weak transcription	Stomach Smooth Muscle	stomach
48	chr14:68827400-68835000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr14:68827600-68830200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr14:68827600-68830400	Weak transcription	Brain Inferior Temporal Lobe	brain

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