Variant report

Variant	rs8013026
Chromosome Location	chr14:68832090-68832091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68831265..68833449-chr14:68839230..68840971,2	K562	blood:
2	chr14:68655604..68658456-chr14:68831451..68833713,2	MCF-7	breast:
3	chr14:68829763..68832771-chr14:68932528..68934610,3	MCF-7	breast:
4	chr14:68827902..68830472-chr14:68830504..68833278,2	MCF-7	breast:
5	chr14:68830853..68833594-chr14:68845594..68847240,2	MCF-7	breast:
6	chr14:68829901..68834300-chr14:68923345..68927378,4	MCF-7	breast:
7	chr14:68830049..68833032-chr14:68833353..68836919,3	MCF-7	breast:
8	chr14:68831946..68833547-chr14:69257471..69259179,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10132981	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10454686	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11158737	0.85[CEU][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12589872	0.84[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17755674	0.90[CEU][hapmap]
rs1956538	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1964854	0.96[EUR][1000 genomes]
rs2064910	0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2331703	0.84[CEU][hapmap]
rs2331704	0.85[CEU][hapmap]
rs2525507	0.85[CEU][hapmap]
rs2753403	0.85[CEU][hapmap]
rs2842320	0.85[CEU][hapmap]
rs2877475	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3784118	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3966077	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4902571	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4902578	0.90[CEU][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4902587	0.85[CEU][hapmap]
rs4902588	0.85[CEU][hapmap]
rs4902589	0.85[CEU][hapmap]
rs7145422	0.93[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8015516	0.94[CEU][hapmap];1.00[EUR][1000 genomes]
rs9323510	0.85[CEU][hapmap];0.88[AMR][1000 genomes]
rs975422	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68826200-68835400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr14:68827200-68833000	Weak transcription	Psoas Muscle	Psoas
3	chr14:68827200-68833400	Weak transcription	Esophagus	oesophagus
4	chr14:68827200-68834200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:68827200-68834400	Weak transcription	Small Intestine	intestine
6	chr14:68827200-68834800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:68827400-68835000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr14:68828200-68835000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr14:68829600-68832200	Enhancers	Pancreas	Pancrea
10	chr14:68829600-68835400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:68829600-68837400	Enhancers	Primary hematopoietic stem cells	blood
12	chr14:68829600-68837400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr14:68829800-68832200	Enhancers	Fetal Intestine Small	intestine
14	chr14:68829800-68832400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:68829800-68833600	Enhancers	Primary T cells from cord blood	blood
16	chr14:68829800-68837400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr14:68830000-68835200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr14:68830200-68832200	Enhancers	Fetal Muscle Leg	muscle
19	chr14:68830200-68832200	Enhancers	Fetal Stomach	stomach
20	chr14:68830200-68832200	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr14:68830200-68832200	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr14:68830200-68833800	Enhancers	A549	lung
23	chr14:68830200-68834400	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr14:68830200-68836200	Enhancers	Fetal Lung	lung
25	chr14:68830400-68832200	Enhancers	Fetal Heart	heart
26	chr14:68830400-68832200	Enhancers	Placenta Amnion	Placenta Amnion
27	chr14:68830400-68832400	Enhancers	Fetal Kidney	kidney
28	chr14:68830600-68832200	Enhancers	Fetal Intestine Large	intestine
29	chr14:68830600-68832400	Enhancers	Rectal Smooth Muscle	rectum
30	chr14:68830600-68833000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr14:68830600-68836800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr14:68830800-68832200	Enhancers	HepG2	liver
33	chr14:68830800-68833600	Enhancers	Colon Smooth Muscle	Colon
34	chr14:68830800-68835200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr14:68831000-68832200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr14:68831000-68832200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr14:68831000-68832200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr14:68831000-68832200	Enhancers	Osteobl	bone
39	chr14:68831000-68832400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr14:68831000-68832400	Enhancers	Brain Substantia Nigra	brain
41	chr14:68831000-68835800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr14:68831200-68832200	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr14:68831200-68832200	Enhancers	Brain Anterior Caudate	brain
44	chr14:68831200-68832200	Enhancers	Stomach Mucosa	stomach
45	chr14:68831200-68832400	Enhancers	Brain Hippocampus Middle	brain
46	chr14:68831200-68832400	Enhancers	NHDF-Ad	bronchial
47	chr14:68831200-68832600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr14:68831200-68832600	Enhancers	HUVEC	blood vessel
49	chr14:68831200-68833000	Enhancers	NHLF	lung
50	chr14:68831200-68833200	Weak transcription	Primary B cells from cord blood	blood

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