Variant report

Variant	rs12589872
Chromosome Location	chr14:68818292-68818293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10132981	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10454686	0.84[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11158737	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1956538	0.84[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1964854	0.95[EUR][1000 genomes]
rs2064910	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2877475	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3784118	0.81[AMR][1000 genomes]
rs3966077	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4902571	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4902578	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7145422	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8013026	0.84[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8015516	0.97[EUR][1000 genomes]
rs9323510	0.85[AMR][1000 genomes]
rs975422	0.84[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68808600-68819200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr14:68811000-68829800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr14:68812400-68818600	Enhancers	Fetal Stomach	stomach
4	chr14:68813600-68825600	Weak transcription	Primary B cells from cord blood	blood
5	chr14:68814200-68820400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:68815800-68818400	Enhancers	Fetal Intestine Small	intestine
7	chr14:68816400-68826000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:68816400-68826200	Weak transcription	Pancreas	Pancrea
9	chr14:68816600-68825600	Weak transcription	Fetal Thymus	thymus
10	chr14:68816600-68826600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:68816800-68825000	Weak transcription	Aorta	Aorta
12	chr14:68817000-68818400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr14:68817400-68824400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr14:68817400-68825000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr14:68817400-68826200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr14:68817600-68818600	Enhancers	Fetal Lung	lung
17	chr14:68817800-68819400	Weak transcription	Fetal Muscle Leg	muscle
18	chr14:68818200-68818400	Enhancers	Fetal Kidney	kidney
19	chr14:68818200-68818800	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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