Variant report

Variant	rs8009876
Chromosome Location	chr14:68817413-68817414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68808236..68811175-chr14:68815933..68818264,2	K562	blood:
2	chr14:68815716..68817716-chr14:69259807..69261417,2	MCF-7	breast:
3	chr14:68815378..68819225-chr14:68819272..68820880,3	MCF-7	breast:
4	chr14:68815687..68818492-chr14:68859330..68861722,2	MCF-7	breast:
5	chr14:68816741..68820574-chr14:68865040..68867633,3	MCF-7	breast:
6	chr14:68808236..68810684-chr14:68816764..68819058,2	K562	blood:
7	chr14:68815262..68818162-chr14:68930944..68932946,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12889206	1.00[MEX][hapmap]
rs2064910	1.00[YRI][hapmap]
rs2331703	1.00[MEX][hapmap]
rs2331704	1.00[MEX][hapmap]
rs2525507	1.00[MEX][hapmap];1.00[YRI][hapmap]
rs2753403	0.86[MEX][hapmap]
rs2842320	0.86[MEX][hapmap]
rs3966077	1.00[YRI][hapmap]
rs4899243	0.85[MEX][hapmap]
rs4902571	1.00[ASW][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs6573834	1.00[MEX][hapmap]
rs7150454	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs8015516	0.86[MEX][hapmap]
rs9323510	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv564962	chr14:68795209-68837882	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68808600-68819200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr14:68811000-68829800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr14:68812400-68818600	Enhancers	Fetal Stomach	stomach
4	chr14:68813600-68825600	Weak transcription	Primary B cells from cord blood	blood
5	chr14:68814200-68820400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:68814800-68818200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr14:68815400-68818000	Enhancers	HepG2	liver
8	chr14:68815800-68818400	Enhancers	Fetal Intestine Small	intestine
9	chr14:68816200-68817800	Enhancers	Fetal Muscle Leg	muscle
10	chr14:68816200-68818000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr14:68816400-68817600	Flanking Active TSS	Fetal Lung	lung
12	chr14:68816400-68817600	Enhancers	NHDF-Ad	bronchial
13	chr14:68816400-68817800	Enhancers	Fetal Brain Male	brain
14	chr14:68816400-68818000	Enhancers	Fetal Intestine Large	intestine
15	chr14:68816400-68826000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr14:68816400-68826200	Weak transcription	Pancreas	Pancrea
17	chr14:68816600-68825600	Weak transcription	Fetal Thymus	thymus
18	chr14:68816600-68826600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:68816800-68825000	Weak transcription	Aorta	Aorta
20	chr14:68817000-68818400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr14:68817400-68818200	Weak transcription	Fetal Kidney	kidney
22	chr14:68817400-68824400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr14:68817400-68825000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr14:68817400-68826200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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