Variant report

Variant	rs9323511
Chromosome Location	chr14:68909388-68909389
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68905969..68908035-chr14:68908553..68911248,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12897307	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2331703	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2331704	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2525507	0.84[AMR][1000 genomes]
rs4902582	0.84[AMR][1000 genomes]
rs4902587	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4902588	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4902589	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9743896	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68895200-68914400	Weak transcription	A549	lung
2	chr14:68903000-68911200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:68904000-68910000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:68906200-68911200	Weak transcription	Spleen	Spleen
5	chr14:68906200-68911400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:68906200-68912200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:68906400-68911400	Weak transcription	Fetal Lung	lung
8	chr14:68906400-68912000	Enhancers	NHDF-Ad	bronchial
9	chr14:68906600-68909600	Weak transcription	Psoas Muscle	Psoas
10	chr14:68906800-68911200	Weak transcription	Right Atrium	heart
11	chr14:68906800-68916000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:68907000-68909600	Weak transcription	Adipose Nuclei	Adipose
13	chr14:68907000-68911200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr14:68907200-68911200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr14:68907400-68909800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:68907800-68909600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr14:68907800-68911200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr14:68908000-68911200	Weak transcription	Liver	Liver
19	chr14:68908000-68913000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:68908600-68910200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr14:68908600-68912200	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr14:68908600-68917400	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr14:68908800-68909600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr14:68908800-68909600	Weak transcription	Osteobl	bone
25	chr14:68908800-68911000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:68909000-68910800	Weak transcription	Colon Smooth Muscle	Colon
27	chr14:68909000-68912600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr14:68909000-68916200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr14:68909200-68912000	Enhancers	Fetal Muscle Leg	muscle

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