Variant report

Variant	rs10438376
Chromosome Location	chr15:77351971-77351972
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr15:77351960-77352590	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:77343568..77346030-chr15:77349669..77352262,2	K562	blood:
2	chr15:77347571..77351341-chr15:77351834..77354291,4	K562	blood:
3	chr15:77351490..77354166-chr15:77358576..77361543,2	MCF-7	breast:
4	chr15:77343568..77346165-chr15:77350645..77352262,2	K562	blood:

Variant related genes	Relation type
TSPAN3	TF binding region
ENSG00000269951	Chromatin interaction
ENSG00000140391	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16968648	1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv833058	chr15:77235895-77393640	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv517068	chr15:77254544-77381222	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv904414	chr15:77304310-77400388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77321200-77362000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:77330000-77352000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr15:77330000-77352200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr15:77330200-77352400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:77337800-77352200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr15:77338200-77352600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:77339000-77362000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:77339200-77352000	Weak transcription	Fetal Brain Male	brain
9	chr15:77339200-77352200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr15:77339200-77358000	Weak transcription	Colonic Mucosa	Colon
11	chr15:77339400-77359200	Weak transcription	Right Ventricle	heart
12	chr15:77339600-77352400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:77339800-77352200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr15:77341800-77352200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr15:77344400-77352000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr15:77344800-77352000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr15:77345000-77355200	Weak transcription	HMEC	breast
18	chr15:77345200-77352000	Weak transcription	Osteobl	bone
19	chr15:77345200-77352200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr15:77345200-77352200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr15:77345200-77352200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:77345200-77352200	Weak transcription	Brain Germinal Matrix	brain
23	chr15:77345200-77352200	Weak transcription	Thymus	Thymus
24	chr15:77345200-77360200	Weak transcription	Spleen	Spleen
25	chr15:77345200-77362000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:77345400-77352200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr15:77345400-77352200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr15:77345400-77352400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:77345400-77355400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:77345400-77361400	Weak transcription	Placenta	Placenta
31	chr15:77345600-77352000	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr15:77346000-77353600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr15:77346600-77352000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:77346600-77352000	Weak transcription	Fetal Kidney	kidney
35	chr15:77346600-77358600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:77346600-77359800	Genic enhancers	Primary B cells from peripheral blood	blood
37	chr15:77346600-77361200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr15:77346800-77356200	Weak transcription	Hela-S3	cervix
39	chr15:77347200-77352200	Weak transcription	Brain Angular Gyrus	brain
40	chr15:77347200-77361600	Weak transcription	Dnd41	blood
41	chr15:77347400-77352000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:77347400-77352200	Weak transcription	HUVEC	blood vessel
43	chr15:77347400-77358600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:77347600-77354400	Enhancers	Duodenum Mucosa	Duodenum
45	chr15:77347800-77352200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:77347800-77352200	Weak transcription	Fetal Brain Female	brain
47	chr15:77348200-77352400	Weak transcription	A549	lung
48	chr15:77348600-77352200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr15:77349000-77352200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr15:77349000-77357600	Enhancers	Liver	Liver

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