Variant report

Variant	rs16968648
Chromosome Location	chr15:77340328-77340329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77338226..77340379-chr15:77349615..77351544,2	K562	blood:
2	chr15:77339171..77340709-chr15:77344530..77346329,2	K562	blood:
3	chr15:77337852..77340867-chr15:77357569..77361333,3	K562	blood:
4	chr15:77339779..77342430-chr15:77346063..77348517,2	MCF-7	breast:
5	chr15:77338266..77341370-chr15:77362139..77364149,3	K562	blood:
6	chr15:77336838..77340785-chr15:77352977..77355906,3	K562	blood:

Variant related genes	Relation type
ENSG00000269951	Chromatin interaction
ENSG00000140391	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10438376	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs74024636	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv833058	chr15:77235895-77393640	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv517068	chr15:77254544-77381222	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv904414	chr15:77304310-77400388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77318400-77350600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr15:77321200-77362000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:77323400-77346000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:77326800-77349800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:77327400-77346000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:77327800-77346800	Strong transcription	Primary B cells from cord blood	blood
7	chr15:77328000-77344400	Weak transcription	Small Intestine	intestine
8	chr15:77330000-77352000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr15:77330000-77352200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr15:77330200-77352400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr15:77330600-77350200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:77331200-77345600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr15:77332800-77344400	Weak transcription	K562	blood
14	chr15:77333000-77342800	Strong transcription	A549	lung
15	chr15:77333200-77351200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr15:77333800-77344400	Weak transcription	HMEC	breast
17	chr15:77333800-77349600	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr15:77333800-77351000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:77334000-77348600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:77334200-77340400	Strong transcription	Duodenum Mucosa	Duodenum
21	chr15:77334200-77341000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr15:77334200-77346000	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr15:77334200-77349600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:77334800-77340600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr15:77334800-77345400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr15:77334800-77346600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr15:77335400-77342600	Strong transcription	Dnd41	blood
28	chr15:77335400-77347400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:77335600-77341000	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr15:77335600-77346600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr15:77335800-77340400	Strong transcription	Liver	Liver
32	chr15:77335800-77340400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr15:77335800-77340800	Strong transcription	Hela-S3	cervix
34	chr15:77336200-77340400	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr15:77337200-77344200	Weak transcription	Colon Smooth Muscle	Colon
36	chr15:77337400-77341200	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr15:77337400-77344000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr15:77337600-77346200	Weak transcription	Fetal Heart	heart
39	chr15:77337800-77348400	Weak transcription	Psoas Muscle	Psoas
40	chr15:77337800-77352200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr15:77338000-77341000	Strong transcription	NHDF-Ad	bronchial
42	chr15:77338000-77341200	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr15:77338000-77345400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr15:77338000-77348400	Weak transcription	Ovary	ovary
45	chr15:77338200-77344000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr15:77338200-77346600	Strong transcription	Primary B cells from peripheral blood	blood
47	chr15:77338200-77352600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr15:77338600-77341800	Strong transcription	HUVEC	blood vessel
49	chr15:77338600-77345400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr15:77339000-77362000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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