Variant report

Variant	rs10438379
Chromosome Location	chr15:34195665-34195666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10220870	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11633680	0.92[ASN][1000 genomes]
rs12903366	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2551416	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2551417	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28599940	0.91[AMR][1000 genomes]
rs2879427	1.00[EUR][1000 genomes]
rs4265777	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs477192	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs484256	0.84[ASN][1000 genomes]
rs517408	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs520935	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs557460	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57396143	0.82[EUR][1000 genomes]
rs575758	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs575782	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs576052	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58893394	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs591036	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs591423	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs592471	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs592839	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs592907	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs609635	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs618574	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs618613	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs633239	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs636322	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6495319	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs671822	0.92[ASN][1000 genomes]
rs680342	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs681603	1.00[EUR][1000 genomes]
rs684146	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs685516	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7180788	1.00[EUR][1000 genomes]
rs7402775	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7403241	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7403637	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7495348	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7495955	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7496144	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7497953	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs919469	1.00[EUR][1000 genomes]
rs9796719	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv903984	chr15:34174066-34238804	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34160000-34199400	Weak transcription	Left Ventricle	heart
2	chr15:34191000-34202800	Weak transcription	NHLF	lung
3	chr15:34191400-34201000	Weak transcription	Pancreas	Pancrea
4	chr15:34193200-34199200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr15:34194800-34198200	Weak transcription	Primary T cells from cord blood	blood
6	chr15:34195000-34200200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:34195000-34203400	Weak transcription	Aorta	Aorta

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