Variant report

Variant	rs57396143
Chromosome Location	chr15:34191748-34191749
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10220870	0.82[EUR][1000 genomes]
rs10438379	0.82[EUR][1000 genomes]
rs16958306	0.87[ASN][1000 genomes]
rs2551416	0.82[EUR][1000 genomes]
rs2551417	0.82[EUR][1000 genomes]
rs2879427	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4265777	0.82[EUR][1000 genomes]
rs477192	0.82[EUR][1000 genomes]
rs517408	1.00[EUR][1000 genomes]
rs520935	1.00[EUR][1000 genomes]
rs557460	0.82[EUR][1000 genomes]
rs576052	0.82[EUR][1000 genomes]
rs58893394	0.82[EUR][1000 genomes]
rs591036	0.82[EUR][1000 genomes]
rs591423	1.00[EUR][1000 genomes]
rs592471	1.00[EUR][1000 genomes]
rs592839	1.00[EUR][1000 genomes]
rs592907	1.00[EUR][1000 genomes]
rs618574	0.82[EUR][1000 genomes]
rs618613	0.82[EUR][1000 genomes]
rs633239	0.82[EUR][1000 genomes]
rs636322	0.82[EUR][1000 genomes]
rs6495319	0.82[EUR][1000 genomes]
rs681603	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs684146	1.00[EUR][1000 genomes]
rs685516	1.00[EUR][1000 genomes]
rs7180788	0.82[EUR][1000 genomes]
rs7402775	0.82[EUR][1000 genomes]
rs7403241	0.82[EUR][1000 genomes]
rs7495348	0.82[EUR][1000 genomes]
rs7495955	0.82[EUR][1000 genomes]
rs7496144	0.82[EUR][1000 genomes]
rs7497953	0.82[EUR][1000 genomes]
rs919469	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9796719	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv903984	chr15:34174066-34238804	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv568922	chr15:34175972-34194586	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34160000-34199400	Weak transcription	Left Ventricle	heart
2	chr15:34189800-34193200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr15:34191000-34202800	Weak transcription	NHLF	lung
4	chr15:34191400-34201000	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links