Variant report

Variant	rs10438390
Chromosome Location	chr15:34415354-34415355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10162748	0.81[EUR][1000 genomes]
rs10851947	1.00[JPT][hapmap]
rs11072971	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs11639176	1.00[JPT][hapmap]
rs11853022	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12440568	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs4587944	1.00[JPT][hapmap]
rs7163031	1.00[JPT][hapmap]
rs73376140	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74010224	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv903986	chr15:34394273-34421951	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34411800-34421000	Weak transcription	A549	lung
2	chr15:34413600-34415600	Enhancers	Placenta	Placenta
3	chr15:34414000-34418800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:34414200-34415400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:34414200-34418200	Enhancers	Fetal Muscle Leg	muscle
6	chr15:34414400-34415600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:34414400-34426400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:34414600-34415600	Enhancers	GM12878-XiMat	blood
9	chr15:34414600-34415600	Enhancers	NH-A	brain
10	chr15:34414800-34415600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr15:34414800-34415600	Flanking Active TSS	HUVEC	blood vessel
12	chr15:34414800-34415600	Enhancers	Osteobl	bone
13	chr15:34414800-34415800	Enhancers	NHDF-Ad	bronchial
14	chr15:34415000-34415400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:34415000-34415400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr15:34415000-34415600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:34415000-34417600	Enhancers	HSMMtube	muscle
18	chr15:34415200-34415600	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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