Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80101158..80103765-chr16:80107510..80109692,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11640679	0.98[EUR][1000 genomes]
rs12149074	0.85[CEU][hapmap]
rs1382387	0.92[CEU][hapmap];0.86[CHB][hapmap];0.99[EUR][1000 genomes]
rs1478505	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1478506	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2199645	0.82[ASN][1000 genomes]
rs4354957	0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs4365299	0.94[JPT][hapmap]
rs4500741	0.85[JPT][hapmap]
rs4889076	0.96[CEU][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes]
rs4889084	0.80[AMR][1000 genomes]
rs4889090	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs4889092	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6564727	0.80[AMR][1000 genomes]
rs6564728	0.95[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6564729	0.99[ASN][1000 genomes]
rs6564730	0.99[ASN][1000 genomes]
rs7187382	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7192544	0.85[CHB][hapmap];0.80[AMR][1000 genomes]
rs7192753	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs8045670	0.96[EUR][1000 genomes]
rs8049829	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8050142	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs8050160	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs9319549	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80108800-80118000	Weak transcription	Fetal Stomach	stomach

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