Variant report

Variant	rs4889076
Chromosome Location	chr16:80072331-80072332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10438631	0.90[EUR][1000 genomes]
rs11640679	0.90[EUR][1000 genomes]
rs12149074	0.84[CEU][hapmap]
rs12716881	0.85[ASN][1000 genomes]
rs1382387	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs4354957	0.95[JPT][hapmap]
rs4365299	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs4500741	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4889071	0.82[YRI][hapmap]
rs4889090	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs6564728	0.95[JPT][hapmap]
rs7187382	0.90[EUR][1000 genomes]
rs7192544	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs7192753	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs8045670	0.88[EUR][1000 genomes]
rs8049829	0.90[EUR][1000 genomes]
rs8050142	0.90[JPT][hapmap]
rs8050160	0.90[JPT][hapmap]
rs9319549	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80062000-80075000	Weak transcription	NH-A	brain
2	chr16:80064000-80072400	Weak transcription	Esophagus	oesophagus
3	chr16:80064600-80073600	Weak transcription	HMEC	breast
4	chr16:80070200-80074800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr16:80070800-80074200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr16:80072000-80072800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr16:80072200-80073000	Enhancers	NHEK	skin
8	chr16:80072200-80076000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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