Variant report

Variant	rs10444828
Chromosome Location	chr15:52667206-52667207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52666162..52668523-chr15:52859738..52861931,2	MCF-7	breast:
2	chr15:52660821..52662604-chr15:52666187..52669062,2	K562	blood:

Variant related genes	Relation type
ENSG00000128989	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10444829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12906271	1.00[EUR][1000 genomes]
rs12910858	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12914306	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12914548	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2414136	1.00[EUR][1000 genomes]
rs2414140	1.00[EUR][1000 genomes]
rs2414146	0.88[AFR][1000 genomes]
rs2414149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2693460	1.00[EUR][1000 genomes]
rs28421476	1.00[EUR][1000 genomes]
rs2924130	1.00[EUR][1000 genomes]
rs4238391	1.00[EUR][1000 genomes]
rs6493553	1.00[EUR][1000 genomes]
rs7183258	1.00[EUR][1000 genomes]
rs8024131	1.00[EUR][1000 genomes]
rs8035121	1.00[EUR][1000 genomes]
rs8037882	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1054899	chr15:52662365-52803756	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52609800-52677600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:52611800-52675800	Weak transcription	Gastric	stomach
3	chr15:52630600-52684800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:52631600-52679200	Weak transcription	Fetal Intestine Small	intestine
5	chr15:52632600-52670400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:52638000-52671600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:52644200-52680800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:52644600-52730200	Weak transcription	Esophagus	oesophagus
9	chr15:52647400-52690600	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr15:52649000-52687200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:52649600-52670600	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr15:52649600-52677600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr15:52649800-52676400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:52650000-52670200	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr15:52650000-52670400	Strong transcription	HUVEC	blood vessel
16	chr15:52650200-52669200	Strong transcription	Primary B cells from cord blood	blood
17	chr15:52652200-52670400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:52653600-52677400	Weak transcription	Colonic Mucosa	Colon
19	chr15:52655800-52675200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:52656800-52674000	Strong transcription	Primary T cells from cord blood	blood
21	chr15:52657400-52670000	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr15:52658400-52687200	Weak transcription	Small Intestine	intestine
23	chr15:52659000-52676600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:52659000-52676600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr15:52659200-52669000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr15:52659200-52669200	Strong transcription	Adipose Nuclei	Adipose
27	chr15:52659200-52671800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr15:52659200-52676400	Strong transcription	Stomach Smooth Muscle	stomach
29	chr15:52659200-52676600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr15:52659200-52676800	Strong transcription	Brain Inferior Temporal Lobe	brain
31	chr15:52659200-52677000	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr15:52659400-52676600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr15:52659800-52673000	Weak transcription	Fetal Kidney	kidney
34	chr15:52660400-52668800	Strong transcription	Primary hematopoietic stem cells	blood
35	chr15:52660400-52670200	Strong transcription	Fetal Brain Female	brain
36	chr15:52660400-52676800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr15:52660600-52668600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr15:52660800-52668600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr15:52660800-52669200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr15:52660800-52669200	Strong transcription	Brain Substantia Nigra	brain
41	chr15:52660800-52669400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:52660800-52670400	Strong transcription	Brain Hippocampus Middle	brain
43	chr15:52661000-52676600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:52661200-52669200	Strong transcription	HSMM	muscle
45	chr15:52661200-52676600	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr15:52661400-52668800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr15:52661600-52669200	Strong transcription	Left Ventricle	heart
48	chr15:52662200-52669600	Strong transcription	Brain Angular Gyrus	brain
49	chr15:52662200-52670400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:52662400-52669800	Strong transcription	Brain Anterior Caudate	brain

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