The 2.0 version of rSNPBase

Variant report

Variant rs28421476
Chromosome Location chr15:52706009-52706010
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52644600-52730200 Weak transcription Esophagus oesophagus
2 chr15:52663200-52711400 Strong transcription Monocytes-CD14+_RO01746 blood
3 chr15:52663400-52708600 Strong transcription Primary monocytes fromperipheralblood blood
4 chr15:52665200-52720600 Weak transcription Pancreas Pancrea
5 chr15:52668800-52730400 Weak transcription Aorta Aorta
6 chr15:52673800-52730200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
7 chr15:52676400-52709800 Weak transcription NHLF lung
8 chr15:52676400-52721400 Weak transcription Gastric stomach
9 chr15:52676600-52706400 Weak transcription Lung lung
10 chr15:52676600-52718600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr15:52677000-52730000 Weak transcription Primary T killer naive cells fromperipheralblood blood
12 chr15:52679800-52729600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr15:52679800-52740000 Weak transcription Spleen Spleen
14 chr15:52680600-52719800 Weak transcription NH-A brain
15 chr15:52680800-52716400 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr15:52680800-52730000 Weak transcription Brain Angular Gyrus brain
17 chr15:52680800-52740200 Weak transcription Thymus Thymus
18 chr15:52681000-52706800 Weak transcription Brain Substantia Nigra brain
19 chr15:52684000-52719800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
20 chr15:52684800-52719800 Weak transcription Primary T helper naive cells fromperipheralblood blood
21 chr15:52684800-52730000 Weak transcription Brain Hippocampus Middle brain
22 chr15:52685000-52717000 Weak transcription Cortex derived primary cultured neurospheres brain
23 chr15:52685400-52706200 Weak transcription H9 Cell Line embryonic stem cell
24 chr15:52685400-52711000 Weak transcription NHDF-Ad bronchial
25 chr15:52685400-52730000 Weak transcription Brain Cingulate Gyrus brain
26 chr15:52685600-52708000 Weak transcription NHEK skin
27 chr15:52687000-52714800 Weak transcription Psoas Muscle Psoas
28 chr15:52687000-52715000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
29 chr15:52687200-52706200 Weak transcription H1 Cell Line embryonic stem cell
30 chr15:52689600-52707400 Weak transcription Fetal Heart heart
31 chr15:52689600-52730200 Weak transcription HUES48 Cell Line embryonic stem cell
32 chr15:52689600-52730200 Weak transcription Left Ventricle heart
33 chr15:52689600-52730400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
34 chr15:52689800-52706800 Weak transcription HSMMtube muscle
35 chr15:52696000-52730200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
36 chr15:52696200-52719800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
37 chr15:52697000-52709800 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr15:52697200-52715000 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr15:52697200-52718400 Weak transcription Dnd41 blood
40 chr15:52697200-52720000 Weak transcription Ovary ovary
41 chr15:52697200-52730000 Weak transcription Brain Inferior Temporal Lobe brain
42 chr15:52697200-52730400 Weak transcription Stomach Smooth Muscle stomach
43 chr15:52697200-52738600 Weak transcription Fetal Brain Female brain
44 chr15:52697400-52720000 Weak transcription Breast Myoepithelial Primary Cells Breast
45 chr15:52697400-52730400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
46 chr15:52697600-52708000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr15:52697600-52708400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr15:52697600-52709400 Weak transcription Muscle Satellite Cultured Cells --
49 chr15:52697600-52710200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
50 chr15:52697600-52720600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived

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Last update: Aug 31, 2015