The 2.0 version of rSNPBase

Variant report

Variant rs28729511
Chromosome Location chr15:52729918-52729919
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:52644600-52730200 Weak transcription Esophagus oesophagus
2 chr15:52668800-52730400 Weak transcription Aorta Aorta
3 chr15:52673800-52730200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr15:52677000-52730000 Weak transcription Primary T killer naive cells fromperipheralblood blood
5 chr15:52679800-52740000 Weak transcription Spleen Spleen
6 chr15:52680800-52730000 Weak transcription Brain Angular Gyrus brain
7 chr15:52680800-52740200 Weak transcription Thymus Thymus
8 chr15:52684800-52730000 Weak transcription Brain Hippocampus Middle brain
9 chr15:52685400-52730000 Weak transcription Brain Cingulate Gyrus brain
10 chr15:52689600-52730200 Weak transcription HUES48 Cell Line embryonic stem cell
11 chr15:52689600-52730200 Weak transcription Left Ventricle heart
12 chr15:52689600-52730400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr15:52696000-52730200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
14 chr15:52697200-52730000 Weak transcription Brain Inferior Temporal Lobe brain
15 chr15:52697200-52730400 Weak transcription Stomach Smooth Muscle stomach
16 chr15:52697200-52738600 Weak transcription Fetal Brain Female brain
17 chr15:52697400-52730400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
18 chr15:52702400-52737600 Weak transcription Duodenum Smooth Muscle Duodenum
19 chr15:52702600-52730000 Weak transcription Brain Anterior Caudate brain
20 chr15:52702600-52730600 Weak transcription Colon Smooth Muscle Colon
21 chr15:52710800-52732200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr15:52711600-52732000 Weak transcription Brain Germinal Matrix brain
23 chr15:52716600-52732600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr15:52717200-52730200 Weak transcription H9 Cell Line embryonic stem cell
25 chr15:52720200-52732200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
26 chr15:52720800-52730400 Weak transcription Primary T cells fromperipheralblood blood
27 chr15:52720800-52732400 Weak transcription NHDF-Ad bronchial
28 chr15:52721000-52732200 Weak transcription HSMMtube muscle
29 chr15:52721000-52732800 Weak transcription NH-A brain
30 chr15:52721000-52733200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr15:52721200-52730000 Weak transcription Primary B cells from peripheral blood blood
32 chr15:52721400-52730000 Weak transcription Primary hematopoietic stem cells blood
33 chr15:52721400-52730000 Weak transcription Primary T regulatory cells fromperipheralblood blood
34 chr15:52721400-52732000 Weak transcription Primary T helper naive cells from peripheral blood blood
35 chr15:52721400-52732200 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr15:52721400-52737800 Weak transcription Primary T helper cells PMA-I stimulated --
37 chr15:52721400-52739000 Weak transcription Primary B cells from cord blood blood
38 chr15:52722600-52730000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
39 chr15:52722600-52730200 Weak transcription HUVEC blood vessel
40 chr15:52722800-52730200 Weak transcription Primary T helper cells fromperipheralblood blood
41 chr15:52724600-52733600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
42 chr15:52725400-52730200 Weak transcription HUES6 Cell Line embryonic stem cell
43 chr15:52726800-52730200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
44 chr15:52727200-52730000 Weak transcription Skeletal Muscle Female skeletal muscle
45 chr15:52727200-52730400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
46 chr15:52727400-52730200 Weak transcription Fetal Heart heart
47 chr15:52728600-52737400 Weak transcription Psoas Muscle Psoas
48 chr15:52728800-52730000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
49 chr15:52728800-52730400 Weak transcription Right Atrium heart
50 chr15:52728800-52730600 Enhancers Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015